Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq404 129 4e-25 seq1431 118 7e-22 seq1094 113 3e-20 >seq404 Length=684826 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| ||||| |||||||| | || || |||||||| || ||||| || Sbjct 506575 GCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 506516 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||||| |||||||||| || || || || || || || ||||||||||| || || Sbjct 506515 CAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 506456 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| || |||||| ||| ||| | |||||| | ||| || || ||| | Sbjct 506455 GATTCCTTCTTTGTCT-TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAA 506397 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || |||||||| || || ||||| ||||| || |||||| Sbjct 506396 CCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || |||||||| || |||||| || ||||| || || || ||||| || Sbjct 507021 AGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGA 506962 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || ||||| || || |||||||||||||| || || | || ||| Sbjct 506961 CCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCC 506902 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | ||| ||| | || ||||| ||| ||||| | ||| Sbjct 506901 TTGTCT-TGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGT 506843 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || || || || || || ||||| Sbjct 506842 GATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 100 bits (110), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || || |||||||| || |||||||| || | || || Sbjct 506337 AGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGT 506278 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || |||||||||||||| || ||||| ||||| || || || | || || Sbjct 506277 CCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCT 506218 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | |||||| | ||| || || | || || |||| || Sbjct 506217 TTATCT-TGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGT 506159 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || || ||||| || ||||| || |||||||| |||| Sbjct 506158 GATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATTGA 506115 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | |||||| | |||||||||||| || ||||| || ||||| || || | Sbjct 509466 CGCCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCG 509407 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | ||| || | ||||| | ||||| |||||||| || ||||| || || || || | Sbjct 509406 ACAATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGG 509347 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656 | | || || || ||| ||| ||| | || || | || || || | ||| Sbjct 509346 GAATGCCTTCTTTATCT-TGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCC 509288 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || || || || || || || || || ||||| ||||| Sbjct 509287 ACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 >seq1431 Length=173026 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||| || ||||| || || |||||||| ||||| || ||||| | || || | Sbjct 151308 CGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCA 151249 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 |||||||| ||||| ||||||||||||||||| ||||| || || || | |||||| ||| Sbjct 151248 TCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTG 151189 Query 34612 TCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATC 34671 || ||||| |||| | ||||| || ||| ||||| | || || Sbjct 151188 TCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATG 151129 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || ||||| ||||| |||||||||||||| || Sbjct 151128 GTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 >seq1094 Length=241507 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| | ||| ||||||||||||||| || ||||| Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || | |||||| || ||||| || ||||| ||||| || || || Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || || | ||| ||||| ||| || Sbjct 166175 ATACCTTCTTTGTCTTGGAT-TTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTAC 166233 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| ||| || ||||||||||||| || || ||||| |||||||| || Sbjct 166234 CTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314683409693786