Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1094 172 5e-38 seq404 154 1e-32 seq69 96.9 3e-15 >seq1094 Length=241507 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| || | ||||| | || || || || ||| Sbjct 166281 ATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCTTCC 166222 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||| |||||||||||||| || ||||| |||||| Sbjct 166221 GACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 166162 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || |||||||||||||| || || ||| | || || |||||| Sbjct 166161 CAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTACAAC 166102 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| || |||||||| | ||| | || ||||| || Sbjct 166101 ATTCAAAAGGAGTCGACTTTGCATTTGGTACTCCGTCTTCGTGGTGGTAT 166052 >seq404 Length=684826 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| ||||| | || || || ||||| || || || Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || ||||||||||| |||||||| || || || ||| Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||||||| || |||||||| || || | ||||| |||||| Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAAC 506983 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||||| ||||||||| | || ||||| || Sbjct 506984 ATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCTCCGTGGTGGTAT 507033 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| ||||| || || || | || || || |||| || || ||||| ||||| || Sbjct 506575 CATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTC 506634 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || |||||||||||||||||||| || || || ||||| Sbjct 506635 TGATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCA 506694 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| ||||| |||||||||||| | || | ||||| || || Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAA 506754 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || || || |||||||||| | ||| | || ||||| || Sbjct 506755 CATTCAAAAAGAATCTACACTACATTTGGTCCTACGTCTACGTGGTGGTAT 506805 Score = 145 bits (160), Expect = 7e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||||||||| |||| || || | || || | || || || || || Sbjct 506347 CATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTC 506406 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| |||||||||||||||||||| || ||||| || || Sbjct 506407 TGATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCA 506466 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 |||||| || || | ||| ||||| || | |||||| | ||| | || || ||||||| Sbjct 506467 ACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGAC-GGGCGAACATTGTCTGATTACA 506525 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||||| || || || || |||||||| ||||| | || |||||||| Sbjct 506526 ATATTCAAAAAGAATCTACATTGCATTTGGTATTGCGCCTTCGTGGTGGCAT 506577 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || | || |||||| | || || | || || ||||| || Sbjct 506120 ATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCCTCT 506179 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||| ||||||||||| || || |||||| Sbjct 506180 GATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 506239 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| ||||| ||||||| | ||| | |||||||| || Sbjct 506240 CAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTATAAT 506299 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | ||||||||| | ||| | || |||||||| Sbjct 506300 ATCCAAAAGGAATCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCAT 506349 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||| || ||| | ||||| | ||||||||||| || Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||||||||||| ||||||||||| || || ||||| Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||||||||| |||||||| || || | || || |||||| Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||| || || | |||||||| | ||| | || || ||| Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGTCTTCGCGGAGGC 509465 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||| || || | || || | ||||| ||||| || Sbjct 509009 CATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATC 509068 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || ||| ||||||||||| ||||||||||| || || || || Sbjct 509069 CGATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCA 509128 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || ||||| | ||||||||| ||||||||||| || || | || || ||||| Sbjct 509129 ACAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAA 509188 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| | ||||| || | ||| | || ||||| || Sbjct 509189 CATCCAGAAAGAATCTACCCTCCATTTAGTCCTTCGTCTACGTGGTGGTAT 509239 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || || | || ||| | ||||| ||||| ||| Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || ||||||||||| ||||| || || || ||||| Sbjct 508842 GATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 508901 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || ||||| |||||||| || || | || ||||| || Sbjct 508902 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAAT 508961 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || |||||| | || ||||| | ||| | || |||||||| Sbjct 508962 ATCCAGAAAGAATCGACCCTCCACTTGGTACTCCGTCTCCGTGGTGGCAT 509011 >seq69 Length=1433716 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 135505 AGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTC 135564 ||| || |||||||| |||||| | |||||||||||||| ||||| || || || ||||| Sbjct 1185173 AGAGGGAAAAATGCATGGATTTTTACGCATGTATTGGGCTAAAAAAATCTTAGAGTGGTC 1185232 Query 135565 TGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGA 135624 | ||| || | | |||| | || || ||||| ||||||| | |||||||| || Sbjct 1185233 AGAATCTCCAGAAAAGGCATTGGAAATAGCCATATTACTTAATGACAAATACAGTTTGGA 1185292 Query 135625 TGGACGCGATTCAAATGGCTACGTAGGT 135652 ||| | ||| | ||||| || || ||| Sbjct 1185293 TGGCAGAGATCCTAATGGTTATGTTGGT 1185320 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 |||| || ||||||||||| | || |||| |||||||||||| |||||| | | Sbjct 1185373 TAGGATGCATGTGGTCTATCGGTGGCATACATGATCAAGGATGGGCTGAGCGCCCCATAT 1185432 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 ||||||| ||||| || |||||||| | ||||||| | | || ||| |||| || Sbjct 1185433 TTGGCAAAATTCGTTACATGAACTACCAAGGTTGTAAACGTAAGTTTGATGTCAA 1185487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434852933907840