Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq326 105 6e-18
>seq326
Length=702362
Score = 105 bits (116), Expect = 6e-18
Identities = 293/446 (66%), Gaps = 10/446 (2%)
Strand=Plus/Plus
Query 34352 CGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411
|| |||||| |||| |||| || ||| | ||| ||||| || || ||||| || ||
Sbjct 509725 CGCGACTTTTTGGATAAGCTCGGTTTCACGGATCGAGAGGAAGGTGATTTGGGTCCTGTA 509784
Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCG 34471
|| || || |||||| | || ||||| || |||| || || | | |||||
Sbjct 509785 TATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTACCGAACTTGCCACGATAACTAT--- 509841
Query 34472 GGACA----GGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG-AACCCTG 34526
|||| ||| | |||||| || | | || || | || | | || || || |
Sbjct 509842 -GACAACGAGGGTGTGGACCAACTAAAACAGGTTATTCATACAAT-ACGCACTAATCCCG 509899
Query 34527 ATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCC 34586
|||||||| | ||| |||||| ||| ||||| || | ||| | || | |||||| | |
Sbjct 509900 ATGACAGACGTATCATGATGTCCGCTTGGAATCCCATGGACATGCCGCAGATGGCTTTGC 509959
Query 34587 CCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCT 34646
| || || || | | ||| || || || || ||||| ||||| || || || | |
Sbjct 509960 CTCCCTGTCATTGCTTGGCCCAGTTTTATGTTGCCAATGGTGAGCTATCTTGTCAATTAT 510019
Query 34647 ATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGC 34706
||||||| | |||||||| ||||| || || ||||||||||| || || ||
Sbjct 510020 ATCAACGCAGTGCCGACATGGGCTTAGGAGTACCATTCAACATTGCCTCATATGCCTTGT 510079
Query 34707 TCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGG 34766
| || || ||||| || || | || | ||||| || | || || || ||||
Sbjct 510080 TGACCTATATGATTGCCCACATAACTGGCCTAAAGCCTGGTGATTTTGTACACACATTGG 510139
Query 34767 GGGATGCGCATATCTACCTGAACCAC 34792
| ||||| ||| | || |||||||
Sbjct 510140 GCGATGCCCATGTATATAAGAACCAC 510165
Score = 105 bits (116), Expect = 6e-18
Identities = 293/446 (66%), Gaps = 10/446 (2%)
Strand=Plus/Minus
Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612
||||||| || | ||| ||||| ||||| || || || | || ||||| | ||
Sbjct 510165 GTGGTTCTTATATACATGGGCATCGCCCAATGTGTGTACAAAATCACCAGGCTTTAGGCC 510106
Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672
| || || ||||| || || | || || || ||||||||||| || || ||
Sbjct 510105 AGTTATGTGGGCAATCATATAGGTCAACAAGGCATATGAGGCAATGTTGAATGGTACTCC 510046
Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732
||| |||||||| | |||||||| | || || || ||||| ||||| || || ||
Sbjct 510045 TAAGCCCATGTCGGCACTGCGTTGATATAATTGACAAGATAGCTCACCATTGGCAACATA 509986
Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792
|| ||| | | || || || || | |||||| | || | ||| | || |||||
Sbjct 509985 AAACTGGGCCAAGCAATGACAGGGAGGCAAAGCCATCTGCGGCATGTCCATGGGATTCCA 509926
Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTT-CCGCTTCAAGGTGTCGATCACGTACT 6851
||| |||||| ||| | ||||||||| || || || | | || | || || | |
Sbjct 509925 AGCGGACATCATGATACGTCTGTCATCGGGATTAGTGCGT-ATTGTATGAATAACCTGTT 509867
Query 6852 GCAGCTGGTCCGCTCCC----TGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCC 6907
|| |||||| | ||| |||| ||||| | | || || |||| ||
Sbjct 509866 TTAGTTGGTCCACACCCTCGTTGTC----ATAGTTATCGTGGCAAGTTCGGTACTTAGCT 509811
Query 6908 CCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG 6967
||||| || | |||||| || || || || || ||||| || || ||||| ||| | |
Sbjct 509810 CCAAAATGACGCCACTGAAAACCATATACAGGACCCAAATCACCTTCCTCTCGATCCGTG 509751
Query 6968 AACCCCCGCTTGTCCAGAAAGTCTCG 6993
|| || |||| |||| |||||| ||
Sbjct 509750 AAACCGAGCTTATCCAAAAAGTCGCG 509725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448194925302240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |