Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq326 105 6e-18 >seq326 Length=702362 Score = 105 bits (116), Expect = 6e-18 Identities = 293/446 (66%), Gaps = 10/446 (2%) Strand=Plus/Plus Query 34352 CGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 || |||||| |||| |||| || ||| | ||| ||||| || || ||||| || || Sbjct 509725 CGCGACTTTTTGGATAAGCTCGGTTTCACGGATCGAGAGGAAGGTGATTTGGGTCCTGTA 509784 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCG 34471 || || || |||||| | || ||||| || |||| || || | | ||||| Sbjct 509785 TATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTACCGAACTTGCCACGATAACTAT--- 509841 Query 34472 GGACA----GGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG-AACCCTG 34526 |||| ||| | |||||| || | | || || | || | | || || || | Sbjct 509842 -GACAACGAGGGTGTGGACCAACTAAAACAGGTTATTCATACAAT-ACGCACTAATCCCG 509899 Query 34527 ATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCC 34586 |||||||| | ||| |||||| ||| ||||| || | ||| | || | |||||| | | Sbjct 509900 ATGACAGACGTATCATGATGTCCGCTTGGAATCCCATGGACATGCCGCAGATGGCTTTGC 509959 Query 34587 CCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCT 34646 | || || || | | ||| || || || || ||||| ||||| || || || | | Sbjct 509960 CTCCCTGTCATTGCTTGGCCCAGTTTTATGTTGCCAATGGTGAGCTATCTTGTCAATTAT 510019 Query 34647 ATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGC 34706 ||||||| | |||||||| ||||| || || ||||||||||| || || || Sbjct 510020 ATCAACGCAGTGCCGACATGGGCTTAGGAGTACCATTCAACATTGCCTCATATGCCTTGT 510079 Query 34707 TCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGG 34766 | || || ||||| || || | || | ||||| || | || || || |||| Sbjct 510080 TGACCTATATGATTGCCCACATAACTGGCCTAAAGCCTGGTGATTTTGTACACACATTGG 510139 Query 34767 GGGATGCGCATATCTACCTGAACCAC 34792 | ||||| ||| | || ||||||| Sbjct 510140 GCGATGCCCATGTATATAAGAACCAC 510165 Score = 105 bits (116), Expect = 6e-18 Identities = 293/446 (66%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 ||||||| || | ||| ||||| ||||| || || || | || ||||| | || Sbjct 510165 GTGGTTCTTATATACATGGGCATCGCCCAATGTGTGTACAAAATCACCAGGCTTTAGGCC 510106 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 | || || ||||| || || | || || || ||||||||||| || || || Sbjct 510105 AGTTATGTGGGCAATCATATAGGTCAACAAGGCATATGAGGCAATGTTGAATGGTACTCC 510046 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 ||| |||||||| | |||||||| | || || || ||||| ||||| || || || Sbjct 510045 TAAGCCCATGTCGGCACTGCGTTGATATAATTGACAAGATAGCTCACCATTGGCAACATA 509986 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 || ||| | | || || || || | |||||| | || | ||| | || ||||| Sbjct 509985 AAACTGGGCCAAGCAATGACAGGGAGGCAAAGCCATCTGCGGCATGTCCATGGGATTCCA 509926 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTT-CCGCTTCAAGGTGTCGATCACGTACT 6851 ||| |||||| ||| | ||||||||| || || || | | || | || || | | Sbjct 509925 AGCGGACATCATGATACGTCTGTCATCGGGATTAGTGCGT-ATTGTATGAATAACCTGTT 509867 Query 6852 GCAGCTGGTCCGCTCCC----TGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCC 6907 || |||||| | ||| |||| ||||| | | || || |||| || Sbjct 509866 TTAGTTGGTCCACACCCTCGTTGTC----ATAGTTATCGTGGCAAGTTCGGTACTTAGCT 509811 Query 6908 CCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG 6967 ||||| || | |||||| || || || || || ||||| || || ||||| ||| | | Sbjct 509810 CCAAAATGACGCCACTGAAAACCATATACAGGACCCAAATCACCTTCCTCTCGATCCGTG 509751 Query 6968 AACCCCCGCTTGTCCAGAAAGTCTCG 6993 || || |||| |||| |||||| || Sbjct 509750 AAACCGAGCTTATCCAAAAAGTCGCG 509725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448194925302240