Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1094 111 1e-19 seq404 87.8 1e-12 seq1431 84.2 2e-11 >seq1094 Length=241507 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27783 TAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA 27842 ||| |||||||| || ||||| || || || || || ||| ||||| | || || || Sbjct 166288 TAGAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGA 166229 Query 27843 AAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902 ||||| | | || ||||| ||||| |||||||||||| | || Sbjct 166228 GCCTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACC 166169 Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 || || ||||| || || ||||| || ||||||||||| || | |||| |||||| || Sbjct 166168 AGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGA 166109 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| ||| |||||||||||||| | ||| | ||||| || Sbjct 166108 CTACAACATTCAAAAGGAGTCGACTTTGCATTTGGTACTCCGTCTTCGTGGTGG 166055 >seq404 Length=684826 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || ||| | ||||| || ||||| | || || ||| | | Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| || |||||||| |||| || | Sbjct 509298 GATACCATAGAAAAT--GTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATC 509355 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || |||||||| ||||| ||||| || | |||| ||||| || |||| Sbjct 509356 AGCAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACA 509415 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||| || || || | |||||||| | ||| | || || |||| Sbjct 509416 ACATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGTCTTCGCGGAGGCG 509466 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || |||||||| |||| || || ||||| || || |||||||| ||||| |||| Sbjct 506213 GATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAA 506272 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||||||| || |||||||| || || | ||||||||| | Sbjct 506273 GATGGACGTACCTTGTCCGATTATAATATCCAAAAGGAATCTACACTTCATTTGGTTCTT 506332 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 506333 CGTCTACGTGGTGGC 506347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || || || || ||||| || || || |||||||| Sbjct 506669 GACAAAGAAGGTATTCCCCCAGATCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAA 506728 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||| || ||||| |||||||| || | |||||||| | Sbjct 506729 GACGGACGTACATTGTCCGACTATAACATTCAAAAAGAATCTACACTACATTTGGTCCTA 506788 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 506789 CGTCTACGTGGTGG 506802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || || || || ||| || ||| | || |||||| || Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| || |||||||| |||| || | Sbjct 509070 GATACTATCGAAAAT--GTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACC 509127 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| || ||||| || |||||||| || | |||| ||||| || |||| Sbjct 509128 AACAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACA 509187 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || | ||||| || | ||| | ||||| || Sbjct 509188 ACATCCAGAAAGAATCTACCCTCCATTTAGTCCTTCGTCTACGTGGTGG 509236 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27889 GAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAA 27948 |||||| |||| || |||||||| || || ||||| || ||||| ||||| || | Sbjct 508653 GAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGT 508712 Query 27949 CGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTG 28008 || | ||||||| ||||||||||| || ||| || | ||||| ||||||||| | Sbjct 508713 CGTACACTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCTC 508772 Query 28009 CGTGGCGG 28016 ||||| || Sbjct 508773 CGTGGTGG 508780 >seq1431 Length=173026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || || ||||| ||||| |||||||||||||| | || Sbjct 151187 GACAAAGAGGGAATTCCACCTGATCAACAACGTTTAATATTTGCCGGAAAACAGCTTGAA 151246 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | || || || |||||||| ||||| || || | ||||| |||||| Sbjct 151247 GATGGTCGTACGTTATCAGACTACAACATACAAAAGGAATCAACGCTTCATTTAGTTTTG 151306 Query 28003 CGTTTGCGTGGCGGCG 28018 || |||||||| |||| Sbjct 151307 CGATTGCGTGGTGGCG 151322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355810172966934