Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 111 1e-19
seq404 87.8 1e-12
seq1431 84.2 2e-11
>seq1094
Length=241507
Score = 111 bits (122), Expect = 1e-19
Identities = 165/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 27783 TAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA 27842
||| |||||||| || ||||| || || || || || ||| ||||| | || || ||
Sbjct 166288 TAGAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGA 166229
Query 27843 AAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902
||||| | | || ||||| ||||| |||||||||||| | ||
Sbjct 166228 GCCTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACC 166169
Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962
|| || ||||| || || ||||| || ||||||||||| || | |||| |||||| ||
Sbjct 166168 AGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGA 166109
Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| ||||| ||| |||||||||||||| | ||| | ||||| ||
Sbjct 166108 CTACAACATTCAAAAGGAGTCGACTTTGCATTTGGTACTCCGTCTTCGTGGTGG 166055
>seq404
Length=684826
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| || || ||| | ||||| || ||||| | || || ||| | |
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| ||||| ||||| || |||||||| |||| || |
Sbjct 509298 GATACCATAGAAAAT--GTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATC 509355
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||||| || || |||||||| ||||| ||||| || | |||| ||||| || ||||
Sbjct 509356 AGCAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACA 509415
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018
||||||| || || || | |||||||| | ||| | || || ||||
Sbjct 509416 ACATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGTCTTCGCGGAGGCG 509466
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| |||||||| |||| || || ||||| || || |||||||| ||||| ||||
Sbjct 506213 GATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAA 506272
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | ||| | |||||||||||| || |||||||| || || | ||||||||| |
Sbjct 506273 GATGGACGTACCTTGTCCGATTATAATATCCAAAAGGAATCTACACTTCATTTGGTTCTT 506332
Query 28003 CGTTTGCGTGGCGGC 28017
||| | ||||| |||
Sbjct 506333 CGTCTACGTGGTGGC 506347
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||||||| |||| || || || || || ||||| || || || ||||||||
Sbjct 506669 GACAAAGAAGGTATTCCCCCAGATCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAA 506728
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||| || ||||| |||||||| || | |||||||| |
Sbjct 506729 GACGGACGTACATTGTCCGACTATAACATTCAAAAAGAATCTACACTACATTTGGTCCTA 506788
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 506789 CGTCTACGTGGTGG 506802
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || || || || || || || ||| || ||| | || |||||| ||
Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| || ||| ||||| || |||||||| |||| || |
Sbjct 509070 GATACTATCGAAAAT--GTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACC 509127
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||||| ||||| || ||||| || |||||||| || | |||| ||||| || ||||
Sbjct 509128 AACAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACA 509187
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| ||||| || | ||||| || | ||| | ||||| ||
Sbjct 509188 ACATCCAGAAAGAATCTACCCTCCATTTAGTCCTTCGTCTACGTGGTGG 509236
Score = 82.4 bits (90), Expect = 5e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 27889 GAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAA 27948
|||||| |||| || |||||||| || || ||||| || ||||| ||||| || |
Sbjct 508653 GAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGT 508712
Query 27949 CGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTG 28008
|| | ||||||| ||||||||||| || ||| || | ||||| ||||||||| |
Sbjct 508713 CGTACACTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCTC 508772
Query 28009 CGTGGCGG 28016
||||| ||
Sbjct 508773 CGTGGTGG 508780
>seq1431
Length=173026
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||| || |||| || || ||||| ||||| |||||||||||||| | ||
Sbjct 151187 GACAAAGAGGGAATTCCACCTGATCAACAACGTTTAATATTTGCCGGAAAACAGCTTGAA 151246
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | || || || |||||||| ||||| || || | ||||| ||||||
Sbjct 151247 GATGGTCGTACGTTATCAGACTACAACATACAAAAGGAATCAACGCTTCATTTAGTTTTG 151306
Query 28003 CGTTTGCGTGGCGGCG 28018
|| |||||||| ||||
Sbjct 151307 CGATTGCGTGGTGGCG 151322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355810172966934
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |