Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq404 150 4e-31
>seq404
Length=684826
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||| || || || |||||||| |||||||| | | ||| | |||||||||||||||
Sbjct 506322 TGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCCAGCTGT 506263
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || ||||| | |||||||| || ||||||| ||||| || || || |||||
Sbjct 506262 TTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTTG 506203
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || ||||| ||||| |||||| ||||||||| | ||||| ||||| || ||
Sbjct 506202 GCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTT 506143
Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117
| ||||| || || | |||||| ||
Sbjct 506142 AATGTCTTCACGAAGATCTGCATATT 506117
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || || ||||| || |||||||| || || | || || | |||||||||| ||||
Sbjct 507006 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGC 506947
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
||||| ||||| || | || |||||||| || |||| ||||||||||| || |||||
Sbjct 506946 TTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTG 506887
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||||||||||||||||||||| || || || ||||| ||||| || || || ||
Sbjct 506886 GCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTC 506827
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
| ||||| || || | |||||
Sbjct 506826 AAGGTCTTGACGAAGATTTGCAT 506804
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || || ||||| ||||| |||||||| | | || | ||||||
Sbjct 508993 AGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCT 508934
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||| || || |||||||| | ||||| || || || |||| |||||||||||
Sbjct 508933 TCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCT 508874
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||| |||||||| ||||| || || ||| || || | |||||| ||
Sbjct 508873 TGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTT 508814
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| || || | |||||
Sbjct 508813 TTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | || || || || ||||| |||||||| || || | | || | ||||||
Sbjct 509221 AGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCT 509162
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||||| |||||||| | |||||||||||| || |||| ||||| || ||
Sbjct 509161 TCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCT 509102
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || |||||| |||||||| || || || ||| || || | ||||| ||
Sbjct 509101 TGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTT 509042
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| || || | |||||
Sbjct 509041 TTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
|| || |||||||| || || ||||| | | || | || ||||| |||||||||||
Sbjct 506544 GTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCA 506485
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
||||| || | || |||||||| || || | |||||| ||||| || || || |||
Sbjct 506484 GCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTA 506425
Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097
|| ||||| ||||| ||||| |||||||| | ||||| || || || || | ||
Sbjct 506424 ACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGTT 506365
Query 211098 TTTACAAACACCTGCAT 211114
|||||||| | |||||
Sbjct 506364 TTTACAAAGATTTGCAT 506348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158973156611330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |