Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq404 98.7 9e-16 >seq404 Length=684826 Score = 98.7 bits (108), Expect = 9e-16 Identities = 172/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| || |||| || ||| || | | ||| || |||||||| | || ||||| Sbjct 506591 TAACGAATATTTG--CATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTT 506534 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||| ||||| | | |||||| |||| |||||||| ||||| || || || | Sbjct 506533 TTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAA 506474 Query 39159 ACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA 39217 ||||| ||||| |||||| || |||||||| ||||| ||| | | | | Sbjct 506473 TCGCTGTTGGTCTGGTGGGATTCCT-TCTTTGTCTTGAATTTTGGCTTTAACATTTTCAA 506415 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 ||||| | ||| || |||| ||||| |||| || |||| ||||| ||||||| Sbjct 506414 TGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGA 506355 Query 39278 TTTGCAT 39284 ||||||| Sbjct 506354 TTTGCAT 506348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429482559082346