Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq404 98.7 9e-16
>seq404
Length=684826
Score = 98.7 bits (108), Expect = 9e-16
Identities = 172/247 (70%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098
|||| || |||| || ||| || | | ||| || |||||||| | || |||||
Sbjct 506591 TAACGAATATTTG--CATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTT 506534
Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158
||| ||||| ||||| | | |||||| |||| |||||||| ||||| || || || |
Sbjct 506533 TTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAA 506474
Query 39159 ACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA 39217
||||| ||||| |||||| || |||||||| ||||| ||| | | | |
Sbjct 506473 TCGCTGTTGGTCTGGTGGGATTCCT-TCTTTGTCTTGAATTTTGGCTTTAACATTTTCAA 506415
Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277
||||| | ||| || |||| ||||| |||| || |||| ||||| |||||||
Sbjct 506414 TGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGA 506355
Query 39278 TTTGCAT 39284
|||||||
Sbjct 506354 TTTGCAT 506348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429482559082346
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |