Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq404 156 3e-33
seq1431 136 3e-27
seq1094 131 1e-25
>seq404
Length=684826
Score = 156 bits (172), Expect = 3e-33
Identities = 162/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || |||||||| || | ||||||||||| ||||| || |||||||| | |
Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635
Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| | | |||| |||| | |||||| |||||||||||| | || ||||||||
Sbjct 506636 GATACTATAGAAAATGTTAAGGC-CAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCA 506694
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||||| || || || ||||| ||| ||||||||| ||| || || ||| || ||
Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAA 506754
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| |||||||| || ||| ||||||| ||
Sbjct 506755 CATTCAAAAAGAATCTACACTACATTTGGT 506784
Score = 125 bits (138), Expect = 5e-24
Identities = 162/220 (74%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 23603 TACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT 23661
||||| || |||||||| ||||| || || | || || || || ||||| | || |||
Sbjct 506111 TACTTCAATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTT 506170
Query 23662 GACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720
|| || | || || |||||| | ||||| | || | || || |||||||| | ||
Sbjct 506171 GAACCCTCTGATACCATTGAAAATGTTAAAGCCAAGA-TTCAAGATAAAGAAGGCATTCC 506229
Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780
||||||||||| ||||| || |||||||| ||||| |||||||| | ||| || ||
Sbjct 506230 TCCAGATCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTC 506289
Query 23781 CGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||||| || || ||||| || || ||| | ||||| |||
Sbjct 506290 CGATTATAATATCCAAAAGGAATCTACACTTCATTTGGTT 506329
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||| | || || ||||| ||||| |||||||| || | ||
Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| | ||| || ||| ||||| ||||| | || ||||| |||
Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || |||||||| || ||||||| | || || | ||| ||||||
Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAAC 506983
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| || || ||||| || | |||||||||||
Sbjct 506984 ATCCAGAAGGAGTCTACCCTCCATTTAGTTTT 507015
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || ||||| | || || ||||| ||||| | || ||||| | |
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||||| | ||||| | |||| || ||||||||||| | || ||||| ||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAA-TTCAAGACAAAGAAGGAATCCCACCAGACCA 506466
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || || ||||| || || ||||||| || || || ||||||||
Sbjct 506467 ACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAA 506526
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| |||||||| || ||||| ||||| || ||
Sbjct 506527 TATTCAAAAAGAATCTACATTGCATTTGGTATT 506559
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || || | || ||||| || || || | ||||| || || |
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| | || |||||| || |||||||| | || ||||||||
Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||||| || |||||||||||||| ||||||| | ||||| || || ||||||
Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || || || || ||| | ||||| ||
Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGT 509446
>seq1431
Length=173026
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||| || ||||| | ||||| || || || || || |||||||| |
Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || | |||| |||| || ||| |||||||| || | || || |||
Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||| ||||||||||||||||| ||||| || ||||| | || || ||| || |||
Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||||||||||| || || || | ||||||||||| | ||||| || ||
Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGG 151320
>seq1094
Length=241507
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || || ||||| || || ||||| || || | || || || |
Sbjct 166284 AAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCT 166225
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| |||||| |||||| | || ||||| |||||||||||| | || ||||||
Sbjct 166224 TCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 166165
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||| ||||| || ||||| ||||||||| |||| || | ||||| || || |||
Sbjct 166164 CAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTAC 166105
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||| ||||| ||||| || || ||||| ||
Sbjct 166104 AACATTCAAAAGGAGTCGACTTTGCATTTGGT 166073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337959993077336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |