Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq404 156 3e-33 seq1431 136 3e-27 seq1094 131 1e-25 >seq404 Length=684826 Score = 156 bits (172), Expect = 3e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || | ||||||||||| ||||| || |||||||| | | Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | | |||| |||| | |||||| |||||||||||| | || |||||||| Sbjct 506636 GATACTATAGAAAATGTTAAGGC-CAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCA 506694 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || || ||||| ||| ||||||||| ||| || || ||| || || Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAA 506754 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| |||||||| || ||| ||||||| || Sbjct 506755 CATTCAAAAAGAATCTACACTACATTTGGT 506784 Score = 125 bits (138), Expect = 5e-24 Identities = 162/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 23603 TACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT 23661 ||||| || |||||||| ||||| || || | || || || || ||||| | || ||| Sbjct 506111 TACTTCAATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTT 506170 Query 23662 GACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720 || || | || || |||||| | ||||| | || | || || |||||||| | || Sbjct 506171 GAACCCTCTGATACCATTGAAAATGTTAAAGCCAAGA-TTCAAGATAAAGAAGGCATTCC 506229 Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780 ||||||||||| ||||| || |||||||| ||||| |||||||| | ||| || || Sbjct 506230 TCCAGATCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTC 506289 Query 23781 CGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || ||||| || || ||| | ||||| ||| Sbjct 506290 CGATTATAATATCCAAAAGGAATCTACACTTCATTTGGTT 506329 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || ||||| ||||| |||||||| || | || Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || ||| ||||| ||||| | || ||||| ||| Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| || ||||||| | || || | ||| |||||| Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAAC 506983 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||||| || | ||||||||||| Sbjct 506984 ATCCAGAAGGAGTCTACCCTCCATTTAGTTTT 507015 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || || ||||| ||||| | || ||||| | | Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||||| | |||| || ||||||||||| | || ||||| || Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAA-TTCAAGACAAAGAAGGAATCCCACCAGACCA 506466 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || || ||||| || || ||||||| || || || |||||||| Sbjct 506467 ACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAA 506526 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| || ||||| ||||| || || Sbjct 506527 TATTCAAAAAGAATCTACATTGCATTTGGTATT 506559 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || ||||| || || || | ||||| || || | Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || |||||| || |||||||| | || |||||||| Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || |||||||||||||| ||||||| | ||||| || || |||||| Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || ||| | ||||| || Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGT 509446 >seq1431 Length=173026 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || ||||| | ||||| || || || || || |||||||| | Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || ||| |||||||| || | || || ||| Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||||||||||||||| ||||| || ||||| | || || ||| || ||| Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||||||| || || || | ||||||||||| | ||||| || || Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGG 151320 >seq1094 Length=241507 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| || || ||||| || || | || || || | Sbjct 166284 AAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCT 166225 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || ||||| |||||||||||| | || |||||| Sbjct 166224 TCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 166165 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || ||||| ||||||||| |||| || | ||||| || || ||| Sbjct 166164 CAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTAC 166105 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| ||||| || || ||||| || Sbjct 166104 AACATTCAAAAGGAGTCGACTTTGCATTTGGT 166073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337959993077336