Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq404 147 5e-30 seq98 118 3e-21 seq1431 105 2e-17 seq289 100 7e-16 seq1094 95.1 3e-14 seq127 93.3 1e-13 >seq404 Length=684826 Score = 147 bits (162), Expect = 5e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||||||||| | ||| |||| ||| ||||| |||||||| ||| Sbjct 506544 GTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCA 506485 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | ||| |||||||| || || || ||||| |||||||| || ||| || || Sbjct 506484 GCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAAT-TTTGGCTTT 506426 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| ||||| || || | || || || || ||||| || || || ||||| || Sbjct 506425 AACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGT 506366 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | |||||| Sbjct 506365 TTTTACAAAGATTTGCAT 506348 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || |||||||| |||| ||| ||||| | ||| || | |||||| Sbjct 508993 AGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCT 508934 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || ||||||||||| | ||||| || || || |||||||||||||||||| Sbjct 508933 TCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCT 508874 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || ||| ||||| || || | ||| || ||||| ||||| || Sbjct 508873 TGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTT 508814 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | |||||| Sbjct 508813 TTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||| || |||||||| |||| ||||| || | |||||| | |||||| Sbjct 509221 AGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCT 509162 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || |||||||| | ||||||||||| || ||||| ||||| || ||| Sbjct 509161 TCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCT 509102 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || |||||| |||||| || || || | ||| || ||||| ||||| || Sbjct 509101 TGAAT-TTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGT 509043 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | |||||| Sbjct 509042 TTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || || || || |||| ||||| |||| || || | |||||||| | |||| Sbjct 507006 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGC 506947 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || | || |||||||| || ||||| |||||||||||||| ||||| Sbjct 506946 TTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTG 506887 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||| |||||||||||| || | || || || | ||||| || ||||| ||| Sbjct 506886 GCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTC 506827 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | |||||| Sbjct 506826 AAGGTCTTGACGAAGATTTGCAT 506804 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || || ||||||||||| | || || |||| ||| || | || ||| Sbjct 506787 AGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCT 506728 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | || ||||| || || ||||||||||| |||||| Sbjct 506727 TCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 506668 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| ||| || || || || | ||| || || | ||||| || Sbjct 506667 TGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTT 506608 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || || | ||| | |||||| Sbjct 506607 TTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 >seq98 Length=1281173 Score = 118 bits (130), Expect = 3e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || ||| |||| || || ||| |||| || ||||| ||| |||| || Sbjct 831323 ATTAATTGGTGATGATCAAATTTATAATGTAATTGTTACTGCACATGCATTTATTATAAT 831382 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||||||| | ||||| || |||| || || || || ||||||||||| ||||| ||||| Sbjct 831383 TTTCTTTATAGTTATACCAATTATAATTGGAGGATTTGGAAATTGATTAGTTCCATTAAT 831442 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698 |||| ||||||||||| || ||||| | | || |||||| Sbjct 831443 ACTTGGAGCTCCTGATATAGCCTTTCCTCGAATAAATAATATA 831485 >seq1431 Length=173026 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||| ||||| | ||||| || | || || | |||||||| ||||| Sbjct 151296 TGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCATCTTCAAGCTGT 151237 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | |||||||| || || ||||| || || ||||| || ||||| Sbjct 151236 TTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTGTCCTGAATCTTG 151177 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| || || || || | || || || | ||| || ||||||||||| Sbjct 151176 GCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATGGTCTTGCCCGTT 151117 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| | || | ||||| || Sbjct 151116 AAAGTTTTGACAAAAATCTGCATCTT 151091 >seq289 Length=736360 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||||| ||| || ||||| |||||||| ||||||||| | ||||| Sbjct 605031 CAAATTTATAATGTTATTGCTACTGCACATGCGTTTGTTATAATTTTCTTTATAGTTATA 604972 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 || |||| || | || |||||||||||||| ||||||||||| |||| Sbjct 604971 CCAATTATAATTTGAGGATTCGGAAATTGATTAGTTCCTTTAATACTTGG 604922 >seq1094 Length=241507 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||| || || ||||| | ||||| || | ||| || Sbjct 166060 ACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGT 166119 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | || || ||||| ||||| | |||||||| || || || ||||| Sbjct 166120 GCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACC 166179 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||| || ||| ||| ||| || ||||| || | || || || || Sbjct 166180 TTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAA 166239 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || || | || || | || | |||||||| Sbjct 166240 GGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284 >seq127 Length=1164848 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 |||||| |||| || ||||||||| |||| ||||||||| | | ||| || |||| || Sbjct 96207 GTTATTGTTACTGCACATGCCTTTATTATAATTTTCTTTATAGCTATACCAATTATAATT 96148 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTG 7669 || || || ||||||||||| ||||||||||| |||| | | ||| Sbjct 96147 GGAGGATTTGGAAATTGATTGGTTCCTTTAATACTTGGAGTTTCTG 96102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192347206597148