Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq305 259 4e-64 >seq305 Length=710094 Score = 259 bits (286), Expect = 4e-64 Identities = 497/719 (69%), Gaps = 18/719 (3%) Strand=Plus/Plus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || |||| || || ||||||||||| ||||||| | ||| | || || || || ||| Sbjct 408371 ACTAGCAGACGATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCA 408430 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || || | || | || | ||| | || || ||||| || | || |||||| | Sbjct 408431 ATCAAATTGCATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTT 408490 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA-ACA 4549 ||||| || | || ||| | || || | || | || ||||| || ||| Sbjct 408491 ATTATCTCAATGATACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACA 408550 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATC 4608 |||||||||||||||||||||||||| | || | ||||| ||||| || || ||||| | Sbjct 408551 -GCAAAATCACAATGCAAACCTTCGTCAC-GCGATATCAGCTCGTTGGAGAATGTTAAGC 408608 Query 4609 CGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAA--TGACCCAGAAAAGAA 4666 ||||||||| || | || || | ||| || || | |||||| || | | ||| ||| Sbjct 408609 CGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAA--GAA 408666 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTGGCTTTGTCTT 4725 ||||||||| || || ||||| |||| || || ||| || ||| | | | Sbjct 408667 TATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGA 408726 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 || ||||| || ||||| | ||||||| | ||||| || || || | || || | Sbjct 408727 TA-TCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCAT 408785 Query 4786 TAAATAA---TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | ||||| || || || ||| | |||| |||||| ||||| || || | ||| | Sbjct 408786 TGAATAAATATTCACGTTGGTCAC---GATCTTTAATATAGGTGTCAATAAGAATGCTGT 408842 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 ||||||| || || | ||| || ||||||||||| || || || ||||| | ||||| | Sbjct 408843 ACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAG 408902 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 ||||||| || || | | ||||||| || || | || || || ||||| || || || Sbjct 408903 TTACTTGCACCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGG 408962 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT-TAAGTTTTTTC 5021 | ||||| || ||||| ||||| || || || || ||| | | || | ||||| | | Sbjct 408963 CAGCAAAGAAAGCCAACACATGGGAAATGAAATATCTTTCAT-TGTCTGTGAGTTTCTCC 409021 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 |||| | || |||||||| | ||| ||||| |||||||||||||| || || || || Sbjct 409022 CAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGC 409080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426986925399986