Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1090 504 1e-137 seq305 257 2e-63 >seq1090 Length=275775 Score = 504 bits (558), Expect = 1e-137 Identities = 1227/1844 (67%), Gaps = 36/1844 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || ||||| || | | ||| ||||| || || || || || |||| |||||| Sbjct 261555 GCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAA 261496 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || |||| |||| || | || ||||| | ||| ||||| | || |||||| Sbjct 261495 TGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACATGTATATTGAAGGATTGACTT 261436 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || || ||||||||||| | |||||| |||||||| || ||||||| || ||||||| Sbjct 261435 TGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCC 261376 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT--TTG-TATTTTGAATGGAA 77039 || | |||||| | | | | || || | |||| | | | | ||||| ||||| Sbjct 261375 CATACCGTTTTGTAGAGCTCTCGTATTTCTTTGGGAATTTCCTCGATGTTTTGTATGGAG 261316 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 |||| || |||||| |||| || || || |||| ||| | | || || ||| Sbjct 261315 CCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTTCGGTCAAA 261256 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 || |||| | |||| |||| || || | ||||| || || | ||| | || || ||| Sbjct 261255 TCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAA 261196 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || || || || ||||| | || ||||||||| |||| |||||| ||||| ||||| Sbjct 261195 ATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCC 261136 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 77279 || ||||| || |||| | | ||| | | ||||||| | ||| | || ||| Sbjct 261135 GTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTT 261076 Query 77280 AGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 || ||||||||| ||||| | || || | ||| | || ||||| || || Sbjct 261075 AGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATA 261016 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || || || | ||| ||| |||||||| || || ||| |||||| | |||| Sbjct 261015 CCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCA 260956 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG- 77458 ||||| |||||||| || || || ||||| ||||| || || | | ||| | || ||| Sbjct 260955 CAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCA-AT-TTGA 260898 Query 77459 -TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 || || || || | |||||| | | ||||| | | ||| || || ||||| | Sbjct 260897 AGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGA 260838 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 | ||||| ||||| || | |||||| ||| || || | || || | | ||||| | Sbjct 260837 CACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGGATAGT 260778 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637 | || | ||||| ||||| |||||||| | | || |||||| || ||| | || Sbjct 260777 AGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATT 260718 Query 77638 TAAGAAAATCAAA---TCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGAT 77694 | ||| ||||| | || | | ||||||||||||| || || || | | Sbjct 260717 TCTTAAAGTCAAAAGTTTTTTCGGGCGTCACAAACATGTTCAGGCAAATGGAGGCCAAGT 260658 Query 77695 TACAAACTGCTACCTCATTAGCGTTG--GCATATTGTATTATCTCGGTACATAGATTACT 77752 | || || || | |||| || || | ||||| | || || || || | ||| || Sbjct 260657 TGCAGACAGCGATTTCAT--CCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCT 260600 Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAG 77812 ||||| || ||||| | ||||||||| || || || ||| || ||||||||| | || Sbjct 260599 GCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAG 260540 Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAG 77871 || | ||||| || ||||| | || ||||| ||||| | ||| | || || Sbjct 260539 CATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTGCGC 260480 Query 77872 CTT-----TTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTC 77926 ||| || | ||| |||| |||| |||| |||| || ||| || Sbjct 260479 CTTAATGGTTCTGTTAGCTTTG-CCGGCCT-----TTTCGTATTTTTCGTAAAGCTTGTC 260426 Query 77927 AAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCA 77986 |||||| || ||||| || |||| | ||| || |||| | || ||||| | ||||| Sbjct 260425 AAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCA 260366 Query 77987 GTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 78046 || || | ||| | || ||| |||||| | ||| |||||||| |||||| || || Sbjct 260365 ATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAG 260306 Query 78047 ATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAAT 78106 ||||| || | ||| ||||| || || ||||||||||| | ||| | |||||| | || Sbjct 260305 ATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGAT 260246 Query 78107 ATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTG 78166 || |||||||| ||||| | || || || | | ||||| ||||| ||| ||||| Sbjct 260245 GTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTG 260186 Query 78167 ATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGT 78226 ||| | || | || ||||| | ||||| ||||| || | | ||| || || || Sbjct 260185 ATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGT 260126 Query 78227 TCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA----TATCC 78282 |||||| || || | || || |||| | |||||||| |||||| || | Sbjct 260125 TCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAAT----GCAATGGACATTGATTC 260070 Query 78283 CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCT 78342 | || ||||| || || || || | ||| || | | || | | | || |||| Sbjct 260069 CAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCT 260010 Query 78343 CTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 78402 | ||| || | | |||| | | || ||||| ||||| ||| || || || Sbjct 260009 CAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGG 259950 Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTAT 78461 ||||| ||| ||||| || |||||||| ||||| | || || || || || || Sbjct 259949 CTGCAGCAAACAATGTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAG-TTATAA 259891 Query 78462 GTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521 |||||||| || || ||||||||| | |||||| ||||| || |||||||||| |||| Sbjct 259890 GTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATA 259831 Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 || || || | ||| | ||||| ||| |||||||| | ||||| ||| | ||| Sbjct 259830 TGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTC 259771 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| ||||| |||||||| ||| || | ||||| | ||| Sbjct 259770 TTAAATCCAAAGTAGTTGTAGCCAAAATCACGGTCGTATACAAT 259727 >seq305 Length=710094 Score = 257 bits (284), Expect = 2e-63 Identities = 487/709 (69%), Gaps = 11/709 (2%) Strand=Plus/Plus Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 ||| | |||||| || ||||| ||||| ||| | ||||||||||| || || | Sbjct 408376 CAGACGATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAA 408435 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 || ||| | || || ||||| || || |||||||| | || || || |||||| Sbjct 408436 ATTGCATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTAT 408495 Query 48089 CG--ATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAA-ACATGC 48145 | ||| ||| ||| || || || | || || || |||||||| || ||| || Sbjct 408496 CTCAATGATAC-GTTCTCTG-CTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GC 408552 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 |||||||||||| | |||||| || | || | ||||| || ||||| | ||||| Sbjct 408553 AAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGG 408612 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 |||||| |||||||| || | ||| || || | || ||| || ||||||||||| Sbjct 408613 CATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCC 408672 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCC 48321 ||| || || ||||| || | | | || || || | || | || || ||||| Sbjct 408673 TTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGA-TATCC 408731 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 | ||||||||||| || | || ||| ||||| ||||| || ||||| || | Sbjct 408732 ATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATA 408791 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 | | | || | | |||||||| || || || || | || || |||||||| | Sbjct 408792 AATATTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCG 408851 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 |||||| ||| || || || ||||| || || || || || | ||||| || | || | Sbjct 408852 AGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCA 408911 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 |||| | |||||| || | | ||||||||| ||||| ||||| |||||||| | Sbjct 408912 CCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGA 408971 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621 | || || ||||| ||| |||||| |||| ||| || ||||| | ||||||| | Sbjct 408972 AAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACA 409031 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||||| || | ||| ||||| ||| | ||||||||||||||||| || Sbjct 409032 TATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGC 409080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694564234978880