Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 504 1e-137
seq305 257 2e-63
>seq1090
Length=275775
Score = 504 bits (558), Expect = 1e-137
Identities = 1227/1844 (67%), Gaps = 36/1844 (2%)
Strand=Plus/Minus
Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862
|| ||||| || | | ||| ||||| || || || || || |||| ||||||
Sbjct 261555 GCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAA 261496
Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922
|| || |||| |||| || | || ||||| | ||| ||||| | || ||||||
Sbjct 261495 TGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACATGTATATTGAAGGATTGACTT 261436
Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982
|| || ||||||||||| | |||||| |||||||| || ||||||| || |||||||
Sbjct 261435 TGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCC 261376
Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT--TTG-TATTTTGAATGGAA 77039
|| | |||||| | | | | || || | |||| | | | | ||||| |||||
Sbjct 261375 CATACCGTTTTGTAGAGCTCTCGTATTTCTTTGGGAATTTCCTCGATGTTTTGTATGGAG 261316
Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099
|||| || |||||| |||| || || || |||| ||| | | || || |||
Sbjct 261315 CCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTTCGGTCAAA 261256
Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159
|| |||| | |||| |||| || || | ||||| || || | ||| | || || |||
Sbjct 261255 TCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAA 261196
Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219
|| || || || ||||| | || ||||||||| |||| |||||| ||||| |||||
Sbjct 261195 ATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCC 261136
Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 77279
|| ||||| || |||| | | ||| | | ||||||| | ||| | || |||
Sbjct 261135 GTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTT 261076
Query 77280 AGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATT 77339
|| ||||||||| ||||| | || || | ||| | || ||||| || ||
Sbjct 261075 AGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATA 261016
Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399
|| || || | ||| ||| |||||||| || || ||| |||||| | ||||
Sbjct 261015 CCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCA 260956
Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG- 77458
||||| |||||||| || || || ||||| ||||| || || | | ||| | || |||
Sbjct 260955 CAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCA-AT-TTGA 260898
Query 77459 -TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517
|| || || || | |||||| | | ||||| | | ||| || || ||||| |
Sbjct 260897 AGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGA 260838
Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577
| ||||| ||||| || | |||||| ||| || || | || || | | ||||| |
Sbjct 260837 CACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGGATAGT 260778
Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637
| || | ||||| ||||| |||||||| | | || |||||| || ||| | ||
Sbjct 260777 AGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATT 260718
Query 77638 TAAGAAAATCAAA---TCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGAT 77694
| ||| ||||| | || | | ||||||||||||| || || || | |
Sbjct 260717 TCTTAAAGTCAAAAGTTTTTTCGGGCGTCACAAACATGTTCAGGCAAATGGAGGCCAAGT 260658
Query 77695 TACAAACTGCTACCTCATTAGCGTTG--GCATATTGTATTATCTCGGTACATAGATTACT 77752
| || || || | |||| || || | ||||| | || || || || | ||| ||
Sbjct 260657 TGCAGACAGCGATTTCAT--CCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCT 260600
Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAG 77812
||||| || ||||| | ||||||||| || || || ||| || ||||||||| | ||
Sbjct 260599 GCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAG 260540
Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAG 77871
|| | ||||| || ||||| | || ||||| ||||| | ||| | || ||
Sbjct 260539 CATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTGCGC 260480
Query 77872 CTT-----TTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTC 77926
||| || | ||| |||| |||| |||| |||| || ||| ||
Sbjct 260479 CTTAATGGTTCTGTTAGCTTTG-CCGGCCT-----TTTCGTATTTTTCGTAAAGCTTGTC 260426
Query 77927 AAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCA 77986
|||||| || ||||| || |||| | ||| || |||| | || ||||| | |||||
Sbjct 260425 AAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCA 260366
Query 77987 GTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 78046
|| || | ||| | || ||| |||||| | ||| |||||||| |||||| || ||
Sbjct 260365 ATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAG 260306
Query 78047 ATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAAT 78106
||||| || | ||| ||||| || || ||||||||||| | ||| | |||||| | ||
Sbjct 260305 ATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGAT 260246
Query 78107 ATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTG 78166
|| |||||||| ||||| | || || || | | ||||| ||||| ||| |||||
Sbjct 260245 GTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTG 260186
Query 78167 ATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGT 78226
||| | || | || ||||| | ||||| ||||| || | | ||| || || ||
Sbjct 260185 ATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGT 260126
Query 78227 TCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA----TATCC 78282
|||||| || || | || || |||| | |||||||| |||||| || |
Sbjct 260125 TCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAAT----GCAATGGACATTGATTC 260070
Query 78283 CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCT 78342
| || ||||| || || || || | ||| || | | || | | | || ||||
Sbjct 260069 CAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCT 260010
Query 78343 CTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 78402
| ||| || | | |||| | | || ||||| ||||| ||| || || ||
Sbjct 260009 CAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGG 259950
Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTAT 78461
||||| ||| ||||| || |||||||| ||||| | || || || || || ||
Sbjct 259949 CTGCAGCAAACAATGTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAG-TTATAA 259891
Query 78462 GTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521
|||||||| || || ||||||||| | |||||| ||||| || |||||||||| ||||
Sbjct 259890 GTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATA 259831
Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581
|| || || | ||| | ||||| ||| |||||||| | ||||| ||| | |||
Sbjct 259830 TGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTC 259771
Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
||||| ||||| |||||||| ||| || | ||||| | |||
Sbjct 259770 TTAAATCCAAAGTAGTTGTAGCCAAAATCACGGTCGTATACAAT 259727
>seq305
Length=710094
Score = 257 bits (284), Expect = 2e-63
Identities = 487/709 (69%), Gaps = 11/709 (2%)
Strand=Plus/Plus
Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028
||| | |||||| || ||||| ||||| ||| | ||||||||||| || || |
Sbjct 408376 CAGACGATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAA 408435
Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088
|| ||| | || || ||||| || || |||||||| | || || || ||||||
Sbjct 408436 ATTGCATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTAT 408495
Query 48089 CG--ATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAA-ACATGC 48145
| ||| ||| ||| || || || | || || || |||||||| || ||| ||
Sbjct 408496 CTCAATGATAC-GTTCTCTG-CTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GC 408552
Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205
|||||||||||| | |||||| || | || | ||||| || ||||| | |||||
Sbjct 408553 AAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGG 408612
Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265
|||||| |||||||| || | ||| || || | || ||| || |||||||||||
Sbjct 408613 CATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCC 408672
Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCC 48321
||| || || ||||| || | | | || || || | || | || || |||||
Sbjct 408673 TTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGA-TATCC 408731
Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381
| ||||||||||| || | || ||| ||||| ||||| || ||||| || |
Sbjct 408732 ATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATA 408791
Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441
| | | || | | |||||||| || || || || | || || |||||||| |
Sbjct 408792 AATATTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCG 408851
Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501
|||||| ||| || || || ||||| || || || || || | ||||| || | || |
Sbjct 408852 AGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCA 408911
Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561
|||| | |||||| || | | ||||||||| ||||| ||||| |||||||| |
Sbjct 408912 CCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGA 408971
Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621
| || || ||||| ||| |||||| |||| ||| || ||||| | ||||||| |
Sbjct 408972 AAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACA 409031
Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670
||||||| || | ||| ||||| ||| | ||||||||||||||||| ||
Sbjct 409032 TATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGC 409080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694564234978880
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