Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq404 107 4e-18 >seq404 Length=684826 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || |||||||| || ||||||||||| |||| | || | |||||||| | Sbjct 507007 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTG 506948 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || |||||||| || | | ||| ||||| | | || |||||||| |||||||| || Sbjct 506947 CTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 506888 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| || | || | | |||| ||| ||| ||||| || || || |||||||| || Sbjct 506887 GGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGT 506828 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||| ||||| Sbjct 506827 CAAGGTCTTGACGAAGATTTGCAT 506804 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || ||||| ||||| ||||||||||| || | ||||| | |||||| Sbjct 509221 AGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCT 509162 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | || ||||||||||| |||| | || ||||| | | || ||||| || || Sbjct 509161 TCCAATTGCTTGCCGGCGAAGATTAAGCGT-TGTTGGTCTGGGGGAATGCCTTCTTTATC 509103 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| ||| ||| | || | | || || || ||||| | || || || Sbjct 509102 TTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGT 509043 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || ||||| ||||||| ||||| Sbjct 509042 TTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| ||||| || |||||||| || ||||||| || || | |||||| Sbjct 506331 AGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCT 506272 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| | | || || || | | || ||||| || ||| Sbjct 506271 TCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCT 506212 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||| ||| | || | | | || || || || || | || || || Sbjct 506211 TGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTC 506152 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | ||||||||||||| |||||| || Sbjct 506151 TTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| |||||||| || |||||||| | || |||| ||| ||||| || || || Sbjct 506544 GTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCA 506485 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | | ||| ||||| | | ||||||||| || ||||||||||| ||| Sbjct 506484 GCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTA 506425 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | | || ||| ||| || || | || || ||||| || || | || Sbjct 506424 ACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGTT 506365 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 506364 TTTACAAAGATTTGCAT 506348 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || ||||| |||||||| ||||| || |||| || || | || ||| Sbjct 506787 AGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCT 506728 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || ||||| || | | ||| || || | | || ||||| || ||| Sbjct 506727 TCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 506668 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| | |||| | || ||| || ||||| || || |||||| Sbjct 506667 TGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTT 506608 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||||| ||||| | ||||| Sbjct 506607 TTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || || || || ||||||||||| || | || || | |||||| Sbjct 509449 AGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCT 509390 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| ||||| ||||| | | ||||| || | | || ||||| || ||| Sbjct 509389 TCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCT 509330 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| |||||| | |||| | | || || || ||||| | ||||| || Sbjct 509329 TGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTC 509270 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| ||||| | ||||| Sbjct 509269 TTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153642779152182