Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq404 123 2e-23 seq1094 98.7 7e-16 >seq404 Length=684826 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| || | | | ||| | || |||| ||| || ||||||||| Sbjct 509428 TCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAG 509369 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| |||||||||| || | ||||| || || || || ||| | || Sbjct 509368 ATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTT 509309 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 ||||||| || | || |||||| |||| |||||| |||||||| || | ||||| ||| Sbjct 509308 TCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACG 509249 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 509248 AAAATTTGCAT 509238 Score = 118 bits (130), Expect = 8e-22 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||||| || ||||||||||| || ||||||| | || | || | || || Sbjct 506328 ACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTA-CGTCCATCTTC 506270 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||| || ||||||||||||||||| || ||||||| ||| | ||||| || || Sbjct 506269 CAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTG 506210 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| || || | ||||| || | || ||| ||||||| || || |||| Sbjct 506209 AATCTTG-GCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCT 506151 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | |||||||||||||| ||||| Sbjct 506150 TGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||| ||| || | || |||| |||||| ||||| || Sbjct 506995 CTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAA 506936 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||||| || |||| || | |||||||| || ||||| |||| | Sbjct 506935 AATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTCACGTT 506876 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||| | | || || || | || || || || || || | |||||| || Sbjct 506875 TTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGAC 506816 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 506815 GAAGATTTGCAT 506804 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || || || ||||| || ||||| | | | || | || ||| Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCTTCC 508931 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || || ||||||||||| |||||||||| || | ||||||||| || Sbjct 508930 AACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 508871 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| | ||||| |||| | ||| || || | || || || || Sbjct 508870 ATCTTA-GCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTT 508812 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||||||| |||||||||||||| Sbjct 508811 TCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| ||||| || |||| | | || |||| |||| ||||| || || || Sbjct 506766 TCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAA 506707 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||| ||||||| || | |||||| || || || || ||| | || Sbjct 506706 ATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTT 506647 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 |||| || || | | ||| || |||| || || || |||||||| | ||||| ||| Sbjct 506646 TCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACG 506587 Query 44327 AAGATTTGCATG 44338 || ||||||||| Sbjct 506586 AATATTTGCATG 506575 >seq1094 Length=241507 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 ||||||||| |||||||| || | | || || || | || |||| || || || |||| Sbjct 166090 CTCCTTTTGAATGTTGTAGTCTGACAAGGTG-CGACCATCCTCCAATTGTTTGCCAGCAA 166148 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 |||||||||| || ||||||| || | |||||| || || || || ||| | Sbjct 166149 AGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACAT 166208 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || ||||||| | || ||||||| ||||| || || || || |||||||| | Sbjct 166209 TTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGA 166268 Query 44325 CGAAGATTTGCAT 44337 | ||||| ||||| Sbjct 166269 CAAAGATCTGCAT 166281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359937567133914