Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq404 123 2e-23
seq1094 98.7 7e-16
>seq404
Length=684826
Score = 123 bits (136), Expect = 2e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| || | | | ||| | || |||| ||| || |||||||||
Sbjct 509428 TCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAG 509369
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|||||||| |||||||||| || | ||||| || || || || ||| | ||
Sbjct 509368 ATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTT 509309
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
||||||| || | || |||||| |||| |||||| |||||||| || | ||||| |||
Sbjct 509308 TCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACG 509249
Query 44327 AAGATTTGCAT 44337
|| ||||||||
Sbjct 509248 AAAATTTGCAT 509238
Score = 118 bits (130), Expect = 8e-22
Identities = 156/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|||| ||||| || ||||||||||| || ||||||| | || | || | || ||
Sbjct 506328 ACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTA-CGTCCATCTTC 506270
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||| || ||||||||||||||||| || ||||||| ||| | ||||| || ||
Sbjct 506269 CAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTG 506210
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| |||| || || | ||||| || | || ||| ||||||| || || ||||
Sbjct 506209 AATCTTG-GCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCT 506151
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || | |||||||||||||| |||||
Sbjct 506150 TGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| |||| ||| || | || |||| |||||| ||||| ||
Sbjct 506995 CTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAA 506936
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||||||||||| || |||| || | |||||||| || ||||| |||| |
Sbjct 506935 AATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTCACGTT 506876
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| | |||||||| | | || || || | || || || || || || | |||||| ||
Sbjct 506875 TTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGAC 506816
Query 44326 GAAGATTTGCAT 44337
||||||||||||
Sbjct 506815 GAAGATTTGCAT 506804
Score = 102 bits (112), Expect = 6e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || || || || ||||| || ||||| | | | || | || |||
Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCTTCC 508931
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||| || || || ||||||||||| |||||||||| || | ||||||||| ||
Sbjct 508930 AACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 508871
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| |||| | ||| | ||||| |||| | ||| || || | || || || ||
Sbjct 508870 ATCTTA-GCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTT 508812
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || |||||||| ||||||||||||||
Sbjct 508811 TCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|| ||||| ||||| || |||| | | || |||| |||| ||||| || || ||
Sbjct 506766 TCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAA 506707
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
||||||||||| ||||||| || | |||||| || || || || ||| | ||
Sbjct 506706 ATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTT 506647
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
|||| || || | | ||| || |||| || || || |||||||| | ||||| |||
Sbjct 506646 TCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACG 506587
Query 44327 AAGATTTGCATG 44338
|| |||||||||
Sbjct 506586 AATATTTGCATG 506575
>seq1094
Length=241507
Score = 98.7 bits (108), Expect = 7e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204
||||||||| |||||||| || | | || || || | || |||| || || || ||||
Sbjct 166090 CTCCTTTTGAATGTTGTAGTCTGACAAGGTG-CGACCATCCTCCAATTGTTTGCCAGCAA 166148
Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264
|||||||||| || ||||||| || | |||||| || || || || ||| |
Sbjct 166149 AGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACAT 166208
Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
|| | || ||||||| | || ||||||| ||||| || || || || |||||||| |
Sbjct 166209 TTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGA 166268
Query 44325 CGAAGATTTGCAT 44337
| ||||| |||||
Sbjct 166269 CAAAGATCTGCAT 166281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359937567133914
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |