Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_033423.1
Length=208501
Score E
Sequences producing significant alignments: (Bits) Value
seq43 111 2e-19
seq326 95.1 2e-14
>seq43
Length=1683053
Score = 111 bits (122), Expect = 2e-19
Identities = 222/324 (69%), Gaps = 10/324 (3%)
Strand=Plus/Plus
Query 155730 CGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAA 155789
||| ||| || || ||||| || || || ||||| || ||||||||||| || ||| ||
Sbjct 421595 CGATTCATAGCAGTAGATTGGGCAGCACGCACCAAACCCTCCAATTCAGCTCCACTGAAA 421654
Query 155790 TTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGAT 155849
|| || || | || | || || | ||||| || | ||| ||| | | ||| ||
Sbjct 421655 TTCTTGGTGGAGGCAGCAAGTTCTTTGCAATCTACATCTGCAGC-AATCTTAT-TGAAAT 421712
Query 155850 TTC--AT---TTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTA 155904
| || ||||| | || | |||| ||||||| ||| |||| |||| ||| |
Sbjct 421713 CACGCATACGTTTAGTA---TGGATATTTAGAATTTGACAACGACCCTGCTCATTGGGCA 421769
Query 155905 ATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGT 155964
| | ||||| || | | |||||| || ||||| | | ||| || |||||||| | ||
Sbjct 421770 AACTGATTTCCATTTGAACTTCCAAACGACCAGGACGCAGTAAGGCATCGTCAATCATGT 421829
Query 155965 CGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTT 156024
| | | ||||||||||| |||| || ||| || || || || ||||| || || |
Sbjct 421830 CACGACGATTGGTCATACCAATGACTAGAATATTATTCAATTGCTCGACACCATCAATCT 421889
Query 156025 TAGACAATAATTGATTGACTACGG 156048
| | ||| || |||||||| ||||
Sbjct 421890 TGGCCAACAACTGATTGACCACGG 421913
>seq326
Length=702362
Score = 95.1 bits (104), Expect = 2e-14
Identities = 224/337 (66%), Gaps = 6/337 (2%)
Strand=Plus/Plus
Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532
|||| ||||| || ||||| || |||||||| ||| | ||||||||||| ||| ||
Sbjct 509765 AAGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTACCGAA 509824
Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592
|||| ||| || || || | || ||||| ||||| || | |||| ||
Sbjct 509825 CTTGCCACGATAACTATGACAACGAGGGTGTGGACCAACTAAAACAGGTTATTCATACAA 509884
Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652
| || || ||||| || | ||||| | ||| |||| |||||||| | || ||
Sbjct 509885 TACGCACTAATCCCGATGACAGACGTATCATGATGTCCGCTTGGAATCCCATGGACATGC 509944
Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTT- 50711
|| | | ||| ||||| |||||| || || ||||||| | ||||| |
Sbjct 509945 CGCAGATGGCTTTGCCTCCCTGTCATTGCTTGGCCCAGTTTTATG---TTGCCAATGGTG 510001
Query 50712 --TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769
|||| ||||||| |||||| | || || ||||| ||||| || || ||||||
Sbjct 510002 AGCTATCTTGTCAATTATATCAACGCAGTGCCGACATGGGCTTAGGAGTACCATTCAACA 510061
Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806
| || || || || || || || ||| |||| || ||
Sbjct 510062 TTGCCTCATATGCCTTGTTGACCTATATGATTGCCCA 510098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 666974788505520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |