Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq43 111 2e-19 seq326 95.1 2e-14 >seq43 Length=1683053 Score = 111 bits (122), Expect = 2e-19 Identities = 222/324 (69%), Gaps = 10/324 (3%) Strand=Plus/Plus Query 155730 CGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAA 155789 ||| ||| || || ||||| || || || ||||| || ||||||||||| || ||| || Sbjct 421595 CGATTCATAGCAGTAGATTGGGCAGCACGCACCAAACCCTCCAATTCAGCTCCACTGAAA 421654 Query 155790 TTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGAT 155849 || || || | || | || || | ||||| || | ||| ||| | | ||| || Sbjct 421655 TTCTTGGTGGAGGCAGCAAGTTCTTTGCAATCTACATCTGCAGC-AATCTTAT-TGAAAT 421712 Query 155850 TTC--AT---TTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTA 155904 | || ||||| | || | |||| ||||||| ||| |||| |||| ||| | Sbjct 421713 CACGCATACGTTTAGTA---TGGATATTTAGAATTTGACAACGACCCTGCTCATTGGGCA 421769 Query 155905 ATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGT 155964 | | ||||| || | | |||||| || ||||| | | ||| || |||||||| | || Sbjct 421770 AACTGATTTCCATTTGAACTTCCAAACGACCAGGACGCAGTAAGGCATCGTCAATCATGT 421829 Query 155965 CGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTT 156024 | | | ||||||||||| |||| || ||| || || || || ||||| || || | Sbjct 421830 CACGACGATTGGTCATACCAATGACTAGAATATTATTCAATTGCTCGACACCATCAATCT 421889 Query 156025 TAGACAATAATTGATTGACTACGG 156048 | | ||| || |||||||| |||| Sbjct 421890 TGGCCAACAACTGATTGACCACGG 421913 >seq326 Length=702362 Score = 95.1 bits (104), Expect = 2e-14 Identities = 224/337 (66%), Gaps = 6/337 (2%) Strand=Plus/Plus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| ||||| || ||||| || |||||||| ||| | ||||||||||| ||| || Sbjct 509765 AAGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTACCGAA 509824 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 |||| ||| || || || | || ||||| ||||| || | |||| || Sbjct 509825 CTTGCCACGATAACTATGACAACGAGGGTGTGGACCAACTAAAACAGGTTATTCATACAA 509884 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | || || ||||| || | ||||| | ||| |||| |||||||| | || || Sbjct 509885 TACGCACTAATCCCGATGACAGACGTATCATGATGTCCGCTTGGAATCCCATGGACATGC 509944 Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTT- 50711 || | | ||| ||||| |||||| || || ||||||| | ||||| | Sbjct 509945 CGCAGATGGCTTTGCCTCCCTGTCATTGCTTGGCCCAGTTTTATG---TTGCCAATGGTG 510001 Query 50712 --TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769 |||| ||||||| |||||| | || || ||||| ||||| || || |||||| Sbjct 510002 AGCTATCTTGTCAATTATATCAACGCAGTGCCGACATGGGCTTAGGAGTACCATTCAACA 510061 Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | || || || || || || || ||| |||| || || Sbjct 510062 TTGCCTCATATGCCTTGTTGACCTATATGATTGCCCA 510098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666974788505520