Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq404 138 3e-27 seq1431 118 3e-21 seq1094 87.8 4e-12 >seq404 Length=684826 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || ||||| ||||||||||| || || || ||| Sbjct 506807 CAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCGGAC 506866 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| |||||||| ||||| ||||| || || || ||||| || Sbjct 506867 ACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAACAG 506926 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||| | |||||||| | || || |||| || ||| || Sbjct 506927 CGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAACATC 506986 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || ||| | |||||| | ||| Sbjct 506987 CAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCTC 507022 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || ||||| || || || | || |||||| ||| || Sbjct 509241 CAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCTGAT 509300 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || ||||| || |||||||| || || || || |||||| Sbjct 509301 ACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAGCAA 509360 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| |||||| | |||||||| | || | | || || ||| || Sbjct 509361 CGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAACATC 509420 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || ||||||||||| ||| Sbjct 509421 CAGAAGGAATCAACACTCCAT 509441 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || || ||||| |||||| | ||||| || || || Sbjct 506351 CAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCTGAT 506410 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| ||||||||||||||||| || ||||| || Sbjct 506411 ACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAACAG 506470 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| || || ||||| ||||| || | || | | ||||| || | Sbjct 506471 CGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAATATT 506530 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| ||| ||||| | || ||| Sbjct 506531 CAAAAAGAATCTACATTGCATTTGGTATTG 506560 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || ||||||||||| ||||| | || || ||| || || Sbjct 509013 CAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCCGAT 509072 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||| || |||||||| || || || ||||| ||| Sbjct 509073 ACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAACAA 509132 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || || | |||||||| | ||| | | || || ||| || Sbjct 509133 CGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAACATC 509192 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || |||||||| || || ||| Sbjct 509193 CAGAAAGAATCTACCCTCCAT 509213 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || |||||||| ||||| || || || ||| || || Sbjct 506579 CAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCTGAT 506638 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| ||||||||||| || || || || || || Sbjct 506639 ACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAACAG 506698 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | ||||| ||| | || | |||| |||||| | Sbjct 506699 CGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAACATT 506758 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| ||||| ||| Sbjct 506759 CAAAAAGAATCTACACTACAT 506779 >seq1431 Length=173026 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||| | || || || || || || || || || || || || Sbjct 151097 CAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCGTCTGAT 151156 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||||||||| ||||| || || || || ||| Sbjct 151157 ACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGATCAACAA 151216 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || |||||||||||||| |||||||| | || | | || || ||| | Sbjct 151217 CGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTACAACATA 151276 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||| |||||||| || ||| | |||||| || Sbjct 151277 CAAAAGGAATCAACGCTTCATTTAGTTTTGCGA 151309 >seq1094 Length=241507 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || || || || || || ||||| || ||| | ||||| || Sbjct 166284 AAAATGC---AGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAG 166228 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || || ||||| || || || ||||||||||| ||||| || Sbjct 166227 CCTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCA 166168 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 || || ||||| | ||||| || || ||||| | || ||||| | || |||| | || Sbjct 166167 GATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCAC-CTTGTCAGA 166109 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| | ||||| || || || ||||| Sbjct 166108 CTACAACATTCAAAAGGAGTCGACTTTGCAT 166078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203545478570148