Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq404 138 3e-27
seq1431 118 3e-21
seq1094 87.8 4e-12
>seq404
Length=684826
Score = 138 bits (152), Expect = 3e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || | || || ||||| ||||||||||| || || || |||
Sbjct 506807 CAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCGGAC 506866
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| ||| |||||||| ||||| ||||| || || || ||||| ||
Sbjct 506867 ACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAACAG 506926
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || |||||||| || ||| | |||||||| | || || |||| || ||| ||
Sbjct 506927 CGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAACATC 506986
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
|| || || || || || ||| | |||||| | |||
Sbjct 506987 CAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCTC 507022
Score = 129 bits (142), Expect = 1e-24
Identities = 149/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||| | || ||||| || || || | || |||||| ||| ||
Sbjct 509241 CAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCTGAT 509300
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| || ||||| || |||||||| || || || || ||||||
Sbjct 509301 ACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAGCAA 509360
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||| |||||| | |||||||| | || | | || || ||| ||
Sbjct 509361 CGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAACATC 509420
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || ||||||||||| |||
Sbjct 509421 CAGAAGGAATCAACACTCCAT 509441
Score = 127 bits (140), Expect = 5e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| | || || ||||| |||||| | ||||| || || ||
Sbjct 506351 CAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCTGAT 506410
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || ||| || ||||| ||||||||||||||||| || ||||| ||
Sbjct 506411 ACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAACAG 506470
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || ||||| || || ||||| ||||| || | || | | ||||| || |
Sbjct 506471 CGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAATATT 506530
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
||||||||||| ||| ||||| | || |||
Sbjct 506531 CAAAAAGAATCTACATTGCATTTGGTATTG 506560
Score = 123 bits (136), Expect = 6e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || ||||||||||| ||||| | || || ||| || ||
Sbjct 509013 CAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCCGAT 509072
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || ||| || ||||| || |||||||| || || || ||||| |||
Sbjct 509073 ACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAACAA 509132
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || || | |||||||| | ||| | | || || ||| ||
Sbjct 509133 CGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAACATC 509192
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| |||||||| || || |||
Sbjct 509193 CAGAAAGAATCTACCCTCCAT 509213
Score = 105 bits (116), Expect = 2e-17
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || | || |||||||| ||||| || || || ||| || ||
Sbjct 506579 CAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCTGAT 506638
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || || ||||| ||||||||||| || || || || || ||
Sbjct 506639 ACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAACAG 506698
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||| || || || | ||||| ||| | || | |||| |||||| |
Sbjct 506699 CGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAACATT 506758
Query 178104 CAAAAAGAATCAACACTGCAT 178124
||||||||||| ||||| |||
Sbjct 506759 CAAAAAGAATCTACACTACAT 506779
>seq1431
Length=173026
Score = 118 bits (130), Expect = 3e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || |||||| | || || || || || || || || || || || ||
Sbjct 151097 CAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCGTCTGAT 151156
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||||||||||||||| ||||| || || || || |||
Sbjct 151157 ACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGATCAACAA 151216
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || |||||||||||||| |||||||| | || | | || || ||| |
Sbjct 151217 CGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTACAACATA 151276
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136
||||| |||||||| || ||| | |||||| ||
Sbjct 151277 CAAAAGGAATCAACGCTTCATTTAGTTTTGCGA 151309
>seq1094
Length=241507
Score = 87.8 bits (96), Expect = 4e-12
Identities = 148/211 (70%), Gaps = 5/211 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || || || || || || || ||||| || ||| | ||||| ||
Sbjct 166284 AAAATGC---AGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAG 166228
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| ||||| || || || ||||| || || || ||||||||||| ||||| ||
Sbjct 166227 CCTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCA 166168
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093
|| || ||||| | ||||| || || ||||| | || ||||| | || |||| | ||
Sbjct 166167 GATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCAC-CTTGTCAGA 166109
Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||| | ||||| || || || |||||
Sbjct 166108 CTACAACATTCAAAAGGAGTCGACTTTGCAT 166078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203545478570148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |