Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq404 116 3e-21 >seq404 Length=684826 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || | ||| || || ||||||||| ||||| |||||||| Sbjct 507030 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 506971 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | ||||||||||||||| |||| ||||||||||| | |||| Sbjct 506970 AGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGA 506911 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || |||| ||| | | ||||| | ||| || Sbjct 506910 ATGCCTTCCTTGT-CTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGAC 506852 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| ||||| ||||| || ||||| Sbjct 506851 TTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||||| |||| ||| || || || || ||||||||||||||||| Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | |||||||| ||||| |||| |||||||| || | |||| Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| |||| || | ||| | | ||| || | || || Sbjct 506682 ATACCTTCTTTGT-CTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAAC 506624 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| ||||| | ||||| ||||| || |||||| Sbjct 506623 TTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || || |||| ||||| || || || ||||| || || || || Sbjct 506575 GCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 506516 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || ||| |||| || ||||||||||| ||||| |||| ||||||||||| | || Sbjct 506515 CAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 506456 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || |||| | ||| |||| |||| ||| | | || || | ||| | Sbjct 506455 GATTCCTTCTTTGT-CTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAA 506397 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || |||||||| |||| || ||||| || || |||||| Sbjct 506396 CCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || | ||| || || || ||||| ||||| ||||| || Sbjct 509236 CCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 509177 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | |||||||||||||| || | ||| |||||||| | |||| Sbjct 509176 AAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGA 509117 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || ||| | ||| |||| |||| || | | ||| ||| | || || Sbjct 509116 ATGC-CTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGAC 509058 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || ||||| || ||||| ||||| ||||| || |||||| Sbjct 509057 TTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCATG 509009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462234411690400