Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq14242 98.7 2e-15
seq14215 98.7 2e-15
seq13985 98.7 2e-15
seq13254 96.9 7e-15
seq13834 86.0 1e-11
seq12905 86.0 1e-11
>seq14242
Length=57729
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||||
Sbjct 27935 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 27876
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 27875 CCCACGTTGGGC 27864
>seq14215
Length=63435
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||||
Sbjct 53065 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 53124
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 53125 CCCACGTTGGGC 53136
>seq13985
Length=15832
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||||
Sbjct 12835 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 12776
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 12775 CCCACGTTGGGC 12764
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||| | ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||||
Sbjct 13296 GCCTGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 13355
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 13356 CCCACGTTGGGC 13367
>seq13254
Length=200242
Score = 96.9 bits (106), Expect = 7e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||| | ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||
Sbjct 31120 TGCCTGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 31061
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 31060 CCCCACGTTGGGC 31048
>seq13834
Length=630142
Score = 86.0 bits (94), Expect = 1e-11
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 61079 TCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAAC 61138
|||| ||| ||||||||| || |||| ||||||||||||| ||||||||||| || ||
Sbjct 6551 TCGATTTTATCAAGCATCTACGAGTGAATTGTATGGAAAAGTGCAAGAAATTCCACAGAC 6492
Query 61139 AGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGT 61175
|||| | || ||||||| ||||| || ||||||
Sbjct 6491 AGAACGAACAGCGTTTTACCCTCGGTCACCATATGGT 6455
>seq12905
Length=113012
Score = 86.0 bits (94), Expect = 1e-11
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 61079 TCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAAC 61138
|||| ||| ||||||||| || |||| ||||||||||||| ||||||||||| || ||
Sbjct 1021 TCGATTTTATCAAGCATCTACGAGTGAATTGTATGGAAAAGTGCAAGAAATTCCACAGAC 1080
Query 61139 AGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGT 61175
|||| | || ||||||| ||||| || ||||||
Sbjct 1081 AGAACGAACAGCGTTTTACCCTCGGTCACCATATGGT 1117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057624236879570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |