Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 170 2e-37
seq477 163 3e-35
seq13458 154 2e-32
seq13244 141 1e-28
seq13941 118 1e-21
>seq13338
Length=646138
Score = 170 bits (188), Expect = 2e-37
Identities = 246/344 (72%), Gaps = 10/344 (3%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||||||||||||||| | ||||||| || ||||| ||||||||| || |||||||
Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
||| ||||||||| | ||||| || || |||||||| || || || |||| ||||| |
Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140
Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC-TCG 17164
|||| | ||| ||| || ||||||| |||||| | ||||| | | ||||| ||
Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200
Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT----AAATAATTTCTCTTTTTC 17220
||| |||| | || |||||| || || || || ||||| ||||| || ||
Sbjct 454201 CCTTCTTGC-GCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATC 454259
Query 17221 CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTC 17280
| ||| || || |||| || | ||||||||||| ||||| || || |||||
Sbjct 454260 GT----GTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTC 454315
Query 17281 CATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324
|| || || || ||||| ||||| | || ||||||| ||||
Sbjct 454316 AATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTT 454359
>seq477
Length=28440
Score = 163 bits (180), Expect = 3e-35
Identities = 255/360 (71%), Gaps = 11/360 (3%)
Strand=Plus/Plus
Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029
||| | |||| || |||||||||||||||| | ||||||| || ||||| ||||||
Sbjct 7167 AAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGC 7226
Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089
||| || |||||||||| ||||||||||| ||||| || | |||||||| || ||
Sbjct 7227 ATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCT 7286
Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149
|| |||| || || ||||| | ||||||| || | ||||| |||||| | |||||
Sbjct 7287 TCTACGGCCGCGAAAGCGATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAG 7346
Query 17150 TTCTGCACCCAC-TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT----AA 17204
| | ||||| || ||| |||| | ||| |||||| || || || || ||
Sbjct 7347 TCAAGAGCCCACAACGCCTTCTTGC-GCACACAAGGCATCGTCTCGATCGCGTTGAACAA 7405
Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264
||||||||| || || | ||| || || |||| || | ||||||||||| |
Sbjct 7406 ATAATTTCTTTTCATCGT----GTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCT 7461
Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324
| || | || ||||| || || || || ||||| ||||| | || ||||||| ||||
Sbjct 7462 CAGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAA-AAACGAGCTTCCGTGATTT 7520
>seq13458
Length=7495
Score = 154 bits (170), Expect = 2e-32
Identities = 252/360 (70%), Gaps = 10/360 (3%)
Strand=Plus/Minus
Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029
||| | |||| || |||||||||||||||| | ||||||| || ||||| ||||||
Sbjct 2926 AAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGC 2867
Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089
||| || |||||||||| ||||||||||| ||||| || | |||||||| || ||
Sbjct 2866 ATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCT 2807
Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149
|| |||| || | ||||| | ||| ||| || | ||||| |||||| | |||||
Sbjct 2806 TCTACGGCCGCGTAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAG 2747
Query 17150 TTCTGCACCCAC-TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT----AA 17204
| | ||||| || ||| ||| | ||| |||||| || || || || ||
Sbjct 2746 TCAAGAGCCCACAACGCCTTCGTGC-GCACACAAGGCATCGTCTCGATCGCGTTGAACAA 2688
Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264
||||||||| || || | ||| || || |||| || | ||||||||||| |
Sbjct 2687 ATAATTTCTTTTCATCGT----GTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCT 2632
Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324
| || | || ||||| || || || || ||||| ||||| | || ||||||| ||||
Sbjct 2631 CAGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTT 2572
Score = 127 bits (140), Expect = 2e-24
Identities = 225/325 (69%), Gaps = 10/325 (3%)
Strand=Plus/Minus
Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064
||||||| || ||||| ||||||||| || |||||||||| ||||||||||| ||
Sbjct 6502 TTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCGACGC 6443
Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124
||| || | |||||||| || || || |||| || || ||||| | ||| ||| | |
Sbjct 6442 GAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGCCAAA 6383
Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC-TCGGCTTTTTGCTTTATGCAAT 17183
||||| |||||| | ||||| | | ||||| || ||| |||| | |||
Sbjct 6382 TGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGC-GCACACAAG 6324
Query 17184 CCATCGTTTCTATGGCCTT----AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATAC 17239
|||||| || || || || ||||||||||| || || | ||| || ||
Sbjct 6323 GCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATCGT----GTCCTGGATGTAA 6268
Query 17240 GTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCG 17299
|||| || | || |||||||| || || | || ||||| || || || || |||||
Sbjct 6267 GTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATCCA 6208
Query 17300 TAAAAGCATCGGGCTTCCGCTATTT 17324
||||| | || ||||||| ||||
Sbjct 6207 TAAAAAAAACGAGCTTCCGTGATTT 6183
>seq13244
Length=114396
Score = 141 bits (156), Expect = 1e-28
Identities = 241/343 (70%), Gaps = 16/343 (5%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||||||||||||||| | ||||||| || ||||| ||||||||| || |||||||
Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554
Query 17046 TTAACCAAAATATCG-CG----GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGC 17100
||| ||||||||||| || ||||| || || |||||||| || || || |||| ||
Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614
Query 17101 AAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCA 17160
|| ||||| | ||| ||| || | ||||| |||||| | ||||| | | ||||
Sbjct 3615 GAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674
Query 17161 C-TCGGCTTTTTGCTTTATGCAATCCATCGT-TTCTATGGCCTT----AAATAATTTCTC 17214
| || ||| |||| | ||| |||||| || || | || |||||||||||
Sbjct 3675 CAACGCCTTCTTGC-GCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTT 3733
Query 17215 TTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT 17274
|| || | ||| || || |||| || | ||||||||||| || || | ||
Sbjct 3734 TTCATCGT----GTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGAT 3789
Query 17275 GTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317
||||| || || || || ||||| ||||| | || ||||||
Sbjct 3790 ATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCC 3832
>seq13941
Length=98454
Score = 118 bits (130), Expect = 1e-21
Identities = 240/347 (69%), Gaps = 7/347 (2%)
Strand=Plus/Minus
Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047
|| ||||||||||| | ||| || || ||||| || ||||| |||||||| ||
Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCGTTT-TTC 98321
Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107
| |||||| |||| ||||| ||||| || || || || || || || | || || ||
Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261
Query 17108 ATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGAATCCATTTCTGCACCCACT-CGG 17165
| | ||| ||| || ||||||| ||||| ||| | ||||| | || ||||| ||
Sbjct 98260 ACAACTCGCTCGCCGAACGTCGCCGTCTT-GTTCCCGATCCAATCGAGCGCCCACAACGC 98202
Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTT-TTCCTGT 17224
||| || | | ||| ||||| || || || ||||| || | | | ||| |
Sbjct 98201 CTTCTTACGC-ACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCATCG 98143
Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284
|| || || ||||||| ||| | || ||||||||||| ||||| | |||||| ||
Sbjct 98142 AG-TCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGATC 98084
Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331
||||| ||||||||||| |||| ||||| | ||||| || ||
Sbjct 98083 ATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTC 98037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517450248692520
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