Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq13338 170 2e-37 seq477 163 3e-35 seq13458 154 2e-32 seq13244 141 1e-28 seq13941 118 1e-21 >seq13338 Length=646138 Score = 170 bits (188), Expect = 2e-37 Identities = 246/344 (72%), Gaps = 10/344 (3%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| | ||||||| || ||||| ||||||||| || ||||||| Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||| ||||||||| | ||||| || || |||||||| || || || |||| ||||| | Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC-TCG 17164 |||| | ||| ||| || ||||||| |||||| | ||||| | | ||||| || Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT----AAATAATTTCTCTTTTTC 17220 ||| |||| | || |||||| || || || || ||||| ||||| || || Sbjct 454201 CCTTCTTGC-GCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATC 454259 Query 17221 CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTC 17280 | ||| || || |||| || | ||||||||||| ||||| || || ||||| Sbjct 454260 GT----GTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTC 454315 Query 17281 CATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 || || || || ||||| ||||| | || ||||||| |||| Sbjct 454316 AATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTT 454359 >seq477 Length=28440 Score = 163 bits (180), Expect = 3e-35 Identities = 255/360 (71%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||| | |||| || |||||||||||||||| | ||||||| || ||||| |||||| Sbjct 7167 AAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGC 7226 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 ||| || |||||||||| ||||||||||| ||||| || | |||||||| || || Sbjct 7227 ATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCT 7286 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || |||| || || ||||| | ||||||| || | ||||| |||||| | ||||| Sbjct 7287 TCTACGGCCGCGAAAGCGATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAG 7346 Query 17150 TTCTGCACCCAC-TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT----AA 17204 | | ||||| || ||| |||| | ||| |||||| || || || || || Sbjct 7347 TCAAGAGCCCACAACGCCTTCTTGC-GCACACAAGGCATCGTCTCGATCGCGTTGAACAA 7405 Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 ||||||||| || || | ||| || || |||| || | ||||||||||| | Sbjct 7406 ATAATTTCTTTTCATCGT----GTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCT 7461 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 | || | || ||||| || || || || ||||| ||||| | || ||||||| |||| Sbjct 7462 CAGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAA-AAACGAGCTTCCGTGATTT 7520 >seq13458 Length=7495 Score = 154 bits (170), Expect = 2e-32 Identities = 252/360 (70%), Gaps = 10/360 (3%) Strand=Plus/Minus Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||| | |||| || |||||||||||||||| | ||||||| || ||||| |||||| Sbjct 2926 AAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGC 2867 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 ||| || |||||||||| ||||||||||| ||||| || | |||||||| || || Sbjct 2866 ATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCT 2807 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || |||| || | ||||| | ||| ||| || | ||||| |||||| | ||||| Sbjct 2806 TCTACGGCCGCGTAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAG 2747 Query 17150 TTCTGCACCCAC-TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT----AA 17204 | | ||||| || ||| ||| | ||| |||||| || || || || || Sbjct 2746 TCAAGAGCCCACAACGCCTTCGTGC-GCACACAAGGCATCGTCTCGATCGCGTTGAACAA 2688 Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 ||||||||| || || | ||| || || |||| || | ||||||||||| | Sbjct 2687 ATAATTTCTTTTCATCGT----GTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCT 2632 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 | || | || ||||| || || || || ||||| ||||| | || ||||||| |||| Sbjct 2631 CAGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTT 2572 Score = 127 bits (140), Expect = 2e-24 Identities = 225/325 (69%), Gaps = 10/325 (3%) Strand=Plus/Minus Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 ||||||| || ||||| ||||||||| || |||||||||| ||||||||||| || Sbjct 6502 TTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCGACGC 6443 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124 ||| || | |||||||| || || || |||| || || ||||| | ||| ||| | | Sbjct 6442 GAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGCCAAA 6383 Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC-TCGGCTTTTTGCTTTATGCAAT 17183 ||||| |||||| | ||||| | | ||||| || ||| |||| | ||| Sbjct 6382 TGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGC-GCACACAAG 6324 Query 17184 CCATCGTTTCTATGGCCTT----AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATAC 17239 |||||| || || || || ||||||||||| || || | ||| || || Sbjct 6323 GCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATCGT----GTCCTGGATGTAA 6268 Query 17240 GTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCG 17299 |||| || | || |||||||| || || | || ||||| || || || || ||||| Sbjct 6267 GTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATCCA 6208 Query 17300 TAAAAGCATCGGGCTTCCGCTATTT 17324 ||||| | || ||||||| |||| Sbjct 6207 TAAAAAAAACGAGCTTCCGTGATTT 6183 >seq13244 Length=114396 Score = 141 bits (156), Expect = 1e-28 Identities = 241/343 (70%), Gaps = 16/343 (5%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| | ||||||| || ||||| ||||||||| || ||||||| Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554 Query 17046 TTAACCAAAATATCG-CG----GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGC 17100 ||| ||||||||||| || ||||| || || |||||||| || || || |||| || Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614 Query 17101 AAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCA 17160 || ||||| | ||| ||| || | ||||| |||||| | ||||| | | |||| Sbjct 3615 GAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674 Query 17161 C-TCGGCTTTTTGCTTTATGCAATCCATCGT-TTCTATGGCCTT----AAATAATTTCTC 17214 | || ||| |||| | ||| |||||| || || | || ||||||||||| Sbjct 3675 CAACGCCTTCTTGC-GCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTT 3733 Query 17215 TTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT 17274 || || | ||| || || |||| || | ||||||||||| || || | || Sbjct 3734 TTCATCGT----GTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGAT 3789 Query 17275 GTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 ||||| || || || || ||||| ||||| | || |||||| Sbjct 3790 ATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCC 3832 >seq13941 Length=98454 Score = 118 bits (130), Expect = 1e-21 Identities = 240/347 (69%), Gaps = 7/347 (2%) Strand=Plus/Minus Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 || ||||||||||| | ||| || || ||||| || ||||| |||||||| || Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCGTTT-TTC 98321 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 | |||||| |||| ||||| ||||| || || || || || || || | || || || Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261 Query 17108 ATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGAATCCATTTCTGCACCCACT-CGG 17165 | | ||| ||| || ||||||| ||||| ||| | ||||| | || ||||| || Sbjct 98260 ACAACTCGCTCGCCGAACGTCGCCGTCTT-GTTCCCGATCCAATCGAGCGCCCACAACGC 98202 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTT-TTCCTGT 17224 ||| || | | ||| ||||| || || || ||||| || | | | ||| | Sbjct 98201 CTTCTTACGC-ACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCATCG 98143 Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284 || || || ||||||| ||| | || ||||||||||| ||||| | |||||| || Sbjct 98142 AG-TCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGATC 98084 Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 ||||| ||||||||||| |||| ||||| | ||||| || || Sbjct 98083 ATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTC 98037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517450248692520