Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 116 4e-21
seq477 109 6e-19
seq13458 98.7 1e-15
seq13244 89.7 5e-13
>seq13338
Length=646138
Score = 116 bits (128), Expect = 4e-21
Identities = 233/342 (68%), Gaps = 10/342 (3%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|||||||||||||| | |||||| || || || || ||||| || |||||||||
Sbjct 454023 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 454082
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345
| ||| ||||| | || ||||| || |||||||| || || || || | |||||||||
Sbjct 454083 AGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAGCG 454142
Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA-TTCGGC 16404
|| | ||| || || |||| || ||| || | ||||| | | |||| || |
Sbjct 454143 ATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCC 454202
Query 16405 TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA----TTTCTCTTTTTCCT 16460
|| ||| | ||| |||||| || || || || ||||| ||||| || || |
Sbjct 454203 TTCTTG-CGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATCGT 454261
Query 16461 GAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520
| || || || |||| |||| | |||||||| || || || || ||||| |
Sbjct 454262 G----TCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317
Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562
| || || || |||||||| || | ||||| |||| ||||
Sbjct 454318 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTT 454359
>seq477
Length=28440
Score = 109 bits (120), Expect = 6e-19
Identities = 232/342 (68%), Gaps = 11/342 (3%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|||||||||||||| | |||||| || || || || ||||| || |||||||||
Sbjct 7185 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 7244
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345
| ||| ||||||| || ||||| | |||||||| || || || || | || ||||||
Sbjct 7245 AGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCG 7304
Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA-TTCGGC 16404
|| | |||||| || | || || ||| || | ||||| | | |||| || |
Sbjct 7305 ATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCC 7364
Query 16405 TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT----AAACAATTTCTCTTTTTCCT 16460
|| ||| | |||| |||||| || || || || ||| ||||||| || || |
Sbjct 7365 TTCTTG-CGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCATCGT 7423
Query 16461 GAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520
| || || || |||| |||| | |||||||| || || | || ||||| |
Sbjct 7424 G----TCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479
Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562
| || || || |||||||| || | ||||| |||| ||||
Sbjct 7480 TCGCAATTTGGAATCCATA-AAAAAACGAGCTTCCGTGATTT 7520
>seq13458
Length=7495
Score = 98.7 bits (108), Expect = 1e-15
Identities = 229/342 (67%), Gaps = 10/342 (3%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|||||||||||||| | |||||| || || || || ||||| || |||||||||
Sbjct 2908 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 2849
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345
| ||| ||||||| || ||||| | |||||||| || || || || | || |||||
Sbjct 2848 AGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAGCG 2789
Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA-TTCGGC 16404
|| | ||| || || | || || ||| || | ||||| | | |||| || |
Sbjct 2788 ATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCC 2729
Query 16405 TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT----AAACAATTTCTCTTTTTCCT 16460
|| || | |||| |||||| || || || || ||| ||||||| || || |
Sbjct 2728 TTCGTG-CGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCATCGT 2670
Query 16461 GAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520
| || || || |||| |||| | |||||||| || || | || ||||| |
Sbjct 2669 G----TCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614
Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562
| || || || |||||||| || | ||||| |||| ||||
Sbjct 2613 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTT 2572
>seq13244
Length=114396
Score = 89.7 bits (98), Expect = 5e-13
Identities = 227/341 (67%), Gaps = 16/341 (5%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|||||||||||||| | |||||| || || || || ||||| || |||||||||
Sbjct 3497 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 3556
Query 16286 AACCAGAATAT-----CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAA 16340
| ||| ||||| || || ||||| || |||||||| || || || || | || |
Sbjct 3557 AGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCGA 3616
Query 16341 AAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA-T 16399
||||||| | ||| || || | || || ||| || | ||||| | | ||||
Sbjct 3617 AAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACA 3676
Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGT-TTCTATGGCCTTAAAC----AATTTCTCTT 16454
|| ||| ||| | |||| |||||| || || | |||||| ||||||| ||
Sbjct 3677 ACGCCTTCTTG-CGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTTT 3735
Query 16455 TTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGT 16514
|| || || || || |||| |||| | |||||||| || || | || |
Sbjct 3736 CATCGTG----TCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791
Query 16515 TCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555
|||| || || || || |||||||| || | ||||| |||
Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCC 3832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511320178289480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |