Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq13338 116 4e-21 seq477 109 6e-19 seq13458 98.7 1e-15 seq13244 89.7 5e-13 >seq13338 Length=646138 Score = 116 bits (128), Expect = 4e-21 Identities = 233/342 (68%), Gaps = 10/342 (3%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 |||||||||||||| | |||||| || || || || ||||| || ||||||||| Sbjct 454023 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 454082 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||| ||||| | || ||||| || |||||||| || || || || | ||||||||| Sbjct 454083 AGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAGCG 454142 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA-TTCGGC 16404 || | ||| || || |||| || ||| || | ||||| | | |||| || | Sbjct 454143 ATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCC 454202 Query 16405 TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA----TTTCTCTTTTTCCT 16460 || ||| | ||| |||||| || || || || ||||| ||||| || || | Sbjct 454203 TTCTTG-CGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATCGT 454261 Query 16461 GAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520 | || || || |||| |||| | |||||||| || || || || ||||| | Sbjct 454262 G----TCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317 Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | || || || |||||||| || | ||||| |||| |||| Sbjct 454318 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTT 454359 >seq477 Length=28440 Score = 109 bits (120), Expect = 6e-19 Identities = 232/342 (68%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 |||||||||||||| | |||||| || || || || ||||| || ||||||||| Sbjct 7185 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 7244 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||| ||||||| || ||||| | |||||||| || || || || | || |||||| Sbjct 7245 AGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCG 7304 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA-TTCGGC 16404 || | |||||| || | || || ||| || | ||||| | | |||| || | Sbjct 7305 ATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCC 7364 Query 16405 TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT----AAACAATTTCTCTTTTTCCT 16460 || ||| | |||| |||||| || || || || ||| ||||||| || || | Sbjct 7365 TTCTTG-CGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCATCGT 7423 Query 16461 GAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520 | || || || |||| |||| | |||||||| || || | || ||||| | Sbjct 7424 G----TCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479 Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | || || || |||||||| || | ||||| |||| |||| Sbjct 7480 TCGCAATTTGGAATCCATA-AAAAAACGAGCTTCCGTGATTT 7520 >seq13458 Length=7495 Score = 98.7 bits (108), Expect = 1e-15 Identities = 229/342 (67%), Gaps = 10/342 (3%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 |||||||||||||| | |||||| || || || || ||||| || ||||||||| Sbjct 2908 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 2849 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||| ||||||| || ||||| | |||||||| || || || || | || ||||| Sbjct 2848 AGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAGCG 2789 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA-TTCGGC 16404 || | ||| || || | || || ||| || | ||||| | | |||| || | Sbjct 2788 ATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCC 2729 Query 16405 TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT----AAACAATTTCTCTTTTTCCT 16460 || || | |||| |||||| || || || || ||| ||||||| || || | Sbjct 2728 TTCGTG-CGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCATCGT 2670 Query 16461 GAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520 | || || || |||| |||| | |||||||| || || | || ||||| | Sbjct 2669 G----TCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614 Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | || || || |||||||| || | ||||| |||| |||| Sbjct 2613 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTT 2572 >seq13244 Length=114396 Score = 89.7 bits (98), Expect = 5e-13 Identities = 227/341 (67%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 |||||||||||||| | |||||| || || || || ||||| || ||||||||| Sbjct 3497 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 3556 Query 16286 AACCAGAATAT-----CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAA 16340 | ||| ||||| || || ||||| || |||||||| || || || || | || | Sbjct 3557 AGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCGA 3616 Query 16341 AAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCA-T 16399 ||||||| | ||| || || | || || ||| || | ||||| | | |||| Sbjct 3617 AAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACA 3676 Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGT-TTCTATGGCCTTAAAC----AATTTCTCTT 16454 || ||| ||| | |||| |||||| || || | |||||| ||||||| || Sbjct 3677 ACGCCTTCTTG-CGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTTT 3735 Query 16455 TTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGT 16514 || || || || || |||| |||| | |||||||| || || | || | Sbjct 3736 CATCGTG----TCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791 Query 16515 TCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||| || || || || |||||||| || | ||||| ||| Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCC 3832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511320178289480