Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7637 165 7e-36 seq13722 113 4e-20 >seq7637 Length=48035 Score = 165 bits (182), Expect = 7e-36 Identities = 435/654 (67%), Gaps = 15/654 (2%) Strand=Plus/Minus Query 18564 GGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGAAA---TGAATTTCCT 18620 ||||| ||||||||||||||||||||||| || |||||| | |||| ||||||||| Sbjct 7980 GGAACTTTATCTTTATTTGGAATGCAAGCGCGGTACAATCTCAGAAACAATGAATTTCCA 7921 Query 18621 CTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATC 18680 | | ||||| ||||||||||| ||| | | || ||||| |||||| | ||||| || Sbjct 7920 TTACTCACTACGAAGCGTGTTTTCTGGCGCGGTGTAGTGGAGGAGTTGCTGTGGTTCATA 7861 Query 18681 CGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATATAC 18740 || || || | || ||| | | |||| | |||| ||| | | | Sbjct 7860 AAAGGCAGCACAGACACGAAGGAATTAAATTCAAAAGGAGTGAACATTTGGAACGGAAAT 7801 Query 18741 GGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGG---GGGACCTT 18797 | || || |||| ||| | | | | | || || || | | | || | Sbjct 7800 AGTTCTCGCGAATTCCTAGACC---AAGTCGGACTAAACAGCAACCCAGAAGGCGATGTG 7744 Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT-C 18856 || ||| | ||||||||||| ||| | ||||| |||||| ||||||||| | | ||| | Sbjct 7743 GGACCCGTGTACGGCTTCCAATGGCGGCATTTCGGAGCGAAATATAAAGGC-GCAAATGC 7685 Query 18857 AAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTA-AAACAA 18915 | || || |||||| | ||||| || || ||| || ||| |||| ||| || Sbjct 7684 CGATTACACGCAACAAGGATTTGATCAATTGGAACATGTCATCGATTTAATTCGAAATAA 7625 Query 18916 ACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGG 18975 ||| | | || | || || || || || ||||| ||| || | | ||||| Sbjct 7624 TCCCTTCGA-CAGAGGCATCATCATGTCTTCGTGGAACCCATCAGACTTATCGAAAATGG 7566 Query 18976 TACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCC 19035 || | ||| |||||| || ||| |||||||| | | || |||||||| |||| Sbjct 7565 CTCTCCGTCCTTGTCACGTATTGGCTCAATTTTACGTCTCCGAAGGCGAATTATCGTGCC 7506 Query 19036 AAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATG 19095 | | |||||| |||| | |||||||| || || || || |||||||| ||| | || Sbjct 7505 AGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCCTTTCAACATCGCTAGCTACT 7446 Query 19096 CACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAATTCAT 19154 | || || || | || | || || || || | || || || ||||| || ||||| Sbjct 7445 CCCTCCTCACTTGTATCCTGGCTCACGTGACTA-ATTTGAAGCCTGGAGACTTTATTCAC 7387 Query 19155 ACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAG 19208 | | || || |||||| |||||||||||||| | ||||| | |||| |||| Sbjct 7386 AGTTTAGGCGACGCACATGTTTACTTGAATCATGTTGATGCGATTAAAGAGCAG 7333 >seq13722 Length=82832 Score = 113 bits (124), Expect = 4e-20 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 18971 AATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATC 19030 ||||| || ||||| |||||| || ||| |||||||| | | || |||||||| Sbjct 63887 AATGGCTCTCCCTCCTTGTCACGTATTGGCTCAATTTTACGTCTCCGATGGCGAATTATC 63946 Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGG 19090 ||||| | |||||| |||| | |||||||| || || || || |||||||| ||| | Sbjct 63947 GTGCCAGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCCTTTCAACATCGCTAG 64006 Query 19091 ATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAA 19149 || | || || |||| || | || || || || | || || || ||||| || | Sbjct 64007 CTACTCCCTCCTCACCTGTATCCTGGCTCACGTGACTA-ATTTGAAGCCTGGAGACTTTA 64065 Query 19150 TTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAG 19208 |||| || | || || || ||| |||||||||||||| | ||||| | |||| |||| Sbjct 64066 TTCACACTTTAGGCGACGCGCATGTTTACTTGAATCATGTTGATGCGATTAAAGAGCAG 64124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399432236472255