Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq7637 165 7e-36
seq13722 113 4e-20
>seq7637
Length=48035
Score = 165 bits (182), Expect = 7e-36
Identities = 435/654 (67%), Gaps = 15/654 (2%)
Strand=Plus/Minus
Query 18564 GGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGAAA---TGAATTTCCT 18620
||||| ||||||||||||||||||||||| || |||||| | |||| |||||||||
Sbjct 7980 GGAACTTTATCTTTATTTGGAATGCAAGCGCGGTACAATCTCAGAAACAATGAATTTCCA 7921
Query 18621 CTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATC 18680
| | ||||| ||||||||||| ||| | | || ||||| |||||| | ||||| ||
Sbjct 7920 TTACTCACTACGAAGCGTGTTTTCTGGCGCGGTGTAGTGGAGGAGTTGCTGTGGTTCATA 7861
Query 18681 CGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATATAC 18740
|| || || | || ||| | | |||| | |||| ||| | | |
Sbjct 7860 AAAGGCAGCACAGACACGAAGGAATTAAATTCAAAAGGAGTGAACATTTGGAACGGAAAT 7801
Query 18741 GGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGG---GGGACCTT 18797
| || || |||| ||| | | | | | || || || | | | || |
Sbjct 7800 AGTTCTCGCGAATTCCTAGACC---AAGTCGGACTAAACAGCAACCCAGAAGGCGATGTG 7744
Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT-C 18856
|| ||| | ||||||||||| ||| | ||||| |||||| ||||||||| | | ||| |
Sbjct 7743 GGACCCGTGTACGGCTTCCAATGGCGGCATTTCGGAGCGAAATATAAAGGC-GCAAATGC 7685
Query 18857 AAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTA-AAACAA 18915
| || || |||||| | ||||| || || ||| || ||| |||| ||| ||
Sbjct 7684 CGATTACACGCAACAAGGATTTGATCAATTGGAACATGTCATCGATTTAATTCGAAATAA 7625
Query 18916 ACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGG 18975
||| | | || | || || || || || ||||| ||| || | | |||||
Sbjct 7624 TCCCTTCGA-CAGAGGCATCATCATGTCTTCGTGGAACCCATCAGACTTATCGAAAATGG 7566
Query 18976 TACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCC 19035
|| | ||| |||||| || ||| |||||||| | | || |||||||| ||||
Sbjct 7565 CTCTCCGTCCTTGTCACGTATTGGCTCAATTTTACGTCTCCGAAGGCGAATTATCGTGCC 7506
Query 19036 AAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATG 19095
| | |||||| |||| | |||||||| || || || || |||||||| ||| | ||
Sbjct 7505 AGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCCTTTCAACATCGCTAGCTACT 7446
Query 19096 CACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAATTCAT 19154
| || || || | || | || || || || | || || || ||||| || |||||
Sbjct 7445 CCCTCCTCACTTGTATCCTGGCTCACGTGACTA-ATTTGAAGCCTGGAGACTTTATTCAC 7387
Query 19155 ACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAG 19208
| | || || |||||| |||||||||||||| | ||||| | |||| ||||
Sbjct 7386 AGTTTAGGCGACGCACATGTTTACTTGAATCATGTTGATGCGATTAAAGAGCAG 7333
>seq13722
Length=82832
Score = 113 bits (124), Expect = 4e-20
Identities = 170/239 (71%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 18971 AATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATC 19030
||||| || ||||| |||||| || ||| |||||||| | | || ||||||||
Sbjct 63887 AATGGCTCTCCCTCCTTGTCACGTATTGGCTCAATTTTACGTCTCCGATGGCGAATTATC 63946
Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGG 19090
||||| | |||||| |||| | |||||||| || || || || |||||||| ||| |
Sbjct 63947 GTGCCAGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCCTTTCAACATCGCTAG 64006
Query 19091 ATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAA 19149
|| | || || |||| || | || || || || | || || || ||||| || |
Sbjct 64007 CTACTCCCTCCTCACCTGTATCCTGGCTCACGTGACTA-ATTTGAAGCCTGGAGACTTTA 64065
Query 19150 TTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAG 19208
|||| || | || || || ||| |||||||||||||| | ||||| | |||| ||||
Sbjct 64066 TTCACACTTTAGGCGACGCGCATGTTTACTTGAATCATGTTGATGCGATTAAAGAGCAG 64124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399432236472255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |