Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7637 246 2e-60 seq13722 156 3e-33 >seq7637 Length=48035 Score = 246 bits (272), Expect = 2e-60 Identities = 503/742 (68%), Gaps = 8/742 (1%) Strand=Plus/Plus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||||||||||| ||||||||| | || ||||| || || |||| |||||| Sbjct 7195 TTAAACAGCCATATCCATTTTAATAACCGGATGTGGCTTGTAACCGACTAAGCGAATGTC 7254 Query 101593 ATCTGCTTTAAAGTCATCAATGCA--TGAA-ACATTTCTAGCAAATCTAAGTGTTGGAAA 101649 | | ||| ||| ||||||||| |||| || || | ||| ||| | ||||| Sbjct 7255 AGCGGCTACAAATTCATCAATGTTGTTGAATAC---TCGATCAATGAAAAGCTTCGGAAA 7311 Query 101650 CGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTG 101709 | || || || || |||||||| ||||| ||||||| |||| | || | || Sbjct 7312 AGATCGCGGTGTACGGCTCAACTGCTCTTTAATCGCATCAACATGATTCAAGTAAACATG 7371 Query 101710 AGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCAT 101769 || || |||| | | || ||||| ||||||||| | |||||| || ||||| | || Sbjct 7372 TGCGTCGCCTAAACTGTGAATAAAGTCTCCAGGCTTCAAATTAGTCACGTGAGCCAGGAT 7431 Query 101770 GCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGA 101829 ||||| | || || |||||||| ||||| || |||||||| | |||||||||||||| Sbjct 7432 ACAAGTGAGGAGGGAGTAGCTAGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCTGA 7491 Query 101830 TCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATG 101889 || || ||||| || || || | | || || |||| ||||||||| ||||| || Sbjct 7492 TCGCTGGTACAGCTGGCACGATAATTCGCCTTCGGAGACGTAAAATTGAGCCAATACGTG 7551 Query 101890 ACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCT 101949 |||||| | | ||||||| | | |||||| ||||| | | |||| | || | Sbjct 7552 ACAAGGACGGAGAGCCATTTTCGATAAGTCTGATGGGTTCCACGAAGACATGATGATGCC 7611 Query 101950 TCTATCTGTAGGGTTTGTTT-TTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTT 102008 ||| || | |||| || ||| || ||| || | |||| ||||| |||| ||||| Sbjct 7612 TCTGTC-GAAGGGATTATTTCGAATTAAATCGATGACATGTTCCAATTGATCAAATCCTT 7670 Query 102009 CTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATC 102068 | | |||||| | |||||||||| ||||||||||||| ||| || || | Sbjct 7671 GTTGCGTGTAATCGGCATTTGCGCCTTTATATTTCGCTCCGAAATGCCGCCATTGGAAGC 7730 Query 102069 CATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATG 102128 | ||||| ||||| | ||| ||||| || | | || | || |||| ||| Sbjct 7731 CGTACACGGGTCCCACATCGCCTTCTGGGTTGCTGTTTAGTCCGACTTGGTCTAGGAATT 7790 Query 102129 ATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAG 102188 | ||| | ||| | | |||||||| ||| || || || || || |||| | Sbjct 7791 CGCGAGAACTATTTCCGTTCCAAATGTTCACTCCTTTTGAATTTAATTCCTTCGTGTCTG 7850 Query 102189 TAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAG 102248 | ||| | || ||||||| || || || || ||||| | ||| || || | ||| | Sbjct 7851 TGCTGCCTTTTATGAACCACAGCAACTCCTCCACTACACCGCGCCAGAAAACACGCTTCG 7910 Query 102249 TAGTTAAAAGTGGAAATTCATT 102270 |||| | | |||||||||||| Sbjct 7911 TAGTGAGTAATGGAAATTCATT 7932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 || || || | ||| ||||||| ||| ||||| || |||||||| | |||||||||||| Sbjct 10893 ATACAGGTGAGAAGGGAATAGCCAGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCT 10834 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACA 101887 |||| || ||||| || || || | | | || |||| ||||||||| ||||| Sbjct 10833 GATCGCTGGTACAGCTGGCACGATAATTCGTCTTCGGAGACGTAAAATTGAGCCAATACG 10774 Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTG 101921 |||||||| | | ||||||| | | ||||| Sbjct 10773 TGACAAGGACGGAGAGCCATTTTCGATAAGTCTG 10740 >seq13722 Length=82832 Score = 156 bits (172), Expect = 3e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 101667 TCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTAT 101726 ||| |||| ||||| ||||||| |||| | || | || || || |||| ||| | Sbjct 64128 TCACCTGCTCTTTAATCGCATCAACATGATTCAAGTAAACATGCGCGTCGCCTAAAGTGT 64069 Query 101727 GGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAAT 101786 | ||||| ||||||||| | |||||| || ||||| | || || || | || || | Sbjct 64068 GAATAAAGTCTCCAGGCTTCAAATTAGTCACGTGAGCCAGGATACAGGTGAGGAGGGAGT 64009 Query 101787 AGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGAC 101846 ||||||| ||||| || |||||||| | |||||||||||||||| || ||||| || | Sbjct 64008 AGCTAGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGC 63949 Query 101847 AGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCA 101906 | || | | ||||| |||| ||||||||| ||||| |||||||| || | ||| Sbjct 63948 ACGATAATTCGCCATCGGAGACGTAAAATTGAGCCAATACGTGACAAGGAGGGAGAGCCA 63889 Query 101907 TTTTAGGAATGTCTGAAAC 101925 |||| | ||||||||||| Sbjct 63888 TTTTCGATATGTCTGAAAC 63870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361186307882489