Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq7637 176 3e-39
seq13722 163 2e-35
>seq7637
Length=48035
Score = 176 bits (194), Expect = 3e-39
Identities = 425/638 (67%), Gaps = 13/638 (2%)
Strand=Plus/Plus
Query 97035 CTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAAT 97094
||||||| | | ||||||| ||||||| |||| || || || |||||| |||||||
Sbjct 7333 CTGCTCTTTAATCGCATCAACATGATTCAAGTAAACATGTGCGTCGCCTAAACTGTGAAT 7392
Query 97095 AAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCT 97154
||| |||||||| |||| ||| || || || | |||||||| | || || |||||
Sbjct 7393 AAAGTCTCCAGGCTTCAAATTAGTCACGTGAGCCAGGATACAAGTGAGGAGGGAGTAGCT 7452
Query 97155 AGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGA 97214
||| ||||| |||||||| || ||||||||||||||||||| || || | ||| || ||
Sbjct 7453 AGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGCACGA 7512
Query 97215 AAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTT 97274
| | || || | || ||||| ||| |||||| ||||| || | | ||||||||
Sbjct 7513 TAATTCGCCTTCGGAGACGTAAAATTGAGCCAATACGTGACAAGGACGGAGAGCCATTTT 7572
Query 97275 TGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTG 97334
| | ||| | ||||| | | |||| | || | ||| ||| || || | |
Sbjct 7573 CGATAAGTCTGATGGGTTCCACGAAGACATGATGATGCCTCTGTCGAAGGGATTATTTCG 7632
Query 97335 TATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAG 97394
|| || || | || | |||||||||| |||| | |||| | ||
Sbjct 7633 AATTAAATCGATGACATGTTCCAATTGATCAAATCCTTGTTGCGTGTAATCGGCATTTGC 7692
Query 97395 ACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454
|||| ||||| ||||| ||||||| ||||||||| || || || ||||| | || ||
Sbjct 7693 GCCTTTATATTTCGCTCCGAAATGCCGCCATTGGAAGCCGTACACGGGTCCCACATCGCC 7752
Query 97455 TTCT---TCTCTATCACAGAAACCAAGCTTATCTA--AATAGGACCTAGATCCATTTGCA 97509
|||| | || | | || | | |||| ||| | | ||| | |||| |
Sbjct 7753 TTCTGGGTTGCTGT---TTAGTCCGACTTGGTCTAGGAATTCG--CGAGAACTATTTCCG 7807
Query 97510 TCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAAC 97569
| |||||||| ||| || || | || || |||| || ||| | || |||
Sbjct 7808 TTCCAAATGTTCACTCCTTTTGAATTTAATTCCTTCGTGTCTGTGCTGCCTTTTATGAAC 7867
Query 97570 CACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629
|||| ||| || ||||| ||||| | ||| || || | ||| || || | | |||||
Sbjct 7868 CACAGCAACTCCTCCACTACACCGCGCCAGAAAACACGCTTCGTAGTGAGTAATGGAAAT 7927
Query 97630 TCCT--TTTCTAAG-CTGTATCTAGACTGCATTCCAAA 97664
|| | ||||| || |||| | | |||||||||||
Sbjct 7928 TCATTGTTTCTGAGATTGTACCGCGCTTGCATTCCAAA 7965
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191
||||| || | || ||||||| ||| ||||| |||||||| || |||||||||||||||
Sbjct 10893 ATACAGGTGAGAAGGGAATAGCCAGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCT 10834
Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA 97251
|||| || || | ||| || || | | | || | || ||||| ||| ||||||
Sbjct 10833 GATCGCTGGTACAGCTGGCACGATAATTCGTCTTCGGAGACGTAAAATTGAGCCAATACG 10774
Query 97252 TGACAGGGGGGCAACGCCATTTT 97274
||||| || | | ||||||||
Sbjct 10773 TGACAAGGACGGAGAGCCATTTT 10751
>seq13722
Length=82832
Score = 163 bits (180), Expect = 2e-35
Identities = 180/240 (75%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 97035 CTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAAT 97094
||||||| | | ||||||| ||||||| |||| || || || ||||||||||||||
Sbjct 64124 CTGCTCTTTAATCGCATCAACATGATTCAAGTAAACATGCGCGTCGCCTAAAGTGTGAAT 64065
Query 97095 AAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCT 97154
||| |||||||| |||| ||| || || || | ||||| || | || || |||||
Sbjct 64064 AAAGTCTCCAGGCTTCAAATTAGTCACGTGAGCCAGGATACAGGTGAGGAGGGAGTAGCT 64005
Query 97155 AGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGA 97214
||| ||||| |||||||| || ||||||||||||||||||| || || | ||| || ||
Sbjct 64004 AGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGCACGA 63945
Query 97215 AAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTT 97274
| | ||||| | || ||||| ||| |||||| ||||| || || | ||||||||
Sbjct 63944 TAATTCGCCATCGGAGACGTAAAATTGAGCCAATACGTGACAAGGAGGGAGAGCCATTTT 63885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346721706648230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |