Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7637 176 3e-39 seq13722 163 2e-35 >seq7637 Length=48035 Score = 176 bits (194), Expect = 3e-39 Identities = 425/638 (67%), Gaps = 13/638 (2%) Strand=Plus/Plus Query 97035 CTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAAT 97094 ||||||| | | ||||||| ||||||| |||| || || || |||||| ||||||| Sbjct 7333 CTGCTCTTTAATCGCATCAACATGATTCAAGTAAACATGTGCGTCGCCTAAACTGTGAAT 7392 Query 97095 AAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCT 97154 ||| |||||||| |||| ||| || || || | |||||||| | || || ||||| Sbjct 7393 AAAGTCTCCAGGCTTCAAATTAGTCACGTGAGCCAGGATACAAGTGAGGAGGGAGTAGCT 7452 Query 97155 AGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGA 97214 ||| ||||| |||||||| || ||||||||||||||||||| || || | ||| || || Sbjct 7453 AGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGCACGA 7512 Query 97215 AAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTT 97274 | | || || | || ||||| ||| |||||| ||||| || | | |||||||| Sbjct 7513 TAATTCGCCTTCGGAGACGTAAAATTGAGCCAATACGTGACAAGGACGGAGAGCCATTTT 7572 Query 97275 TGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTG 97334 | | ||| | ||||| | | |||| | || | ||| ||| || || | | Sbjct 7573 CGATAAGTCTGATGGGTTCCACGAAGACATGATGATGCCTCTGTCGAAGGGATTATTTCG 7632 Query 97335 TATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAG 97394 || || || | || | |||||||||| |||| | |||| | || Sbjct 7633 AATTAAATCGATGACATGTTCCAATTGATCAAATCCTTGTTGCGTGTAATCGGCATTTGC 7692 Query 97395 ACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454 |||| ||||| ||||| ||||||| ||||||||| || || || ||||| | || || Sbjct 7693 GCCTTTATATTTCGCTCCGAAATGCCGCCATTGGAAGCCGTACACGGGTCCCACATCGCC 7752 Query 97455 TTCT---TCTCTATCACAGAAACCAAGCTTATCTA--AATAGGACCTAGATCCATTTGCA 97509 |||| | || | | || | | |||| ||| | | ||| | |||| | Sbjct 7753 TTCTGGGTTGCTGT---TTAGTCCGACTTGGTCTAGGAATTCG--CGAGAACTATTTCCG 7807 Query 97510 TCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAAC 97569 | |||||||| ||| || || | || || |||| || ||| | || ||| Sbjct 7808 TTCCAAATGTTCACTCCTTTTGAATTTAATTCCTTCGTGTCTGTGCTGCCTTTTATGAAC 7867 Query 97570 CACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629 |||| ||| || ||||| ||||| | ||| || || | ||| || || | | ||||| Sbjct 7868 CACAGCAACTCCTCCACTACACCGCGCCAGAAAACACGCTTCGTAGTGAGTAATGGAAAT 7927 Query 97630 TCCT--TTTCTAAG-CTGTATCTAGACTGCATTCCAAA 97664 || | ||||| || |||| | | ||||||||||| Sbjct 7928 TCATTGTTTCTGAGATTGTACCGCGCTTGCATTCCAAA 7965 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 ||||| || | || ||||||| ||| ||||| |||||||| || ||||||||||||||| Sbjct 10893 ATACAGGTGAGAAGGGAATAGCCAGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCT 10834 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA 97251 |||| || || | ||| || || | | | || | || ||||| ||| |||||| Sbjct 10833 GATCGCTGGTACAGCTGGCACGATAATTCGTCTTCGGAGACGTAAAATTGAGCCAATACG 10774 Query 97252 TGACAGGGGGGCAACGCCATTTT 97274 ||||| || | | |||||||| Sbjct 10773 TGACAAGGACGGAGAGCCATTTT 10751 >seq13722 Length=82832 Score = 163 bits (180), Expect = 2e-35 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 97035 CTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAAT 97094 ||||||| | | ||||||| ||||||| |||| || || || |||||||||||||| Sbjct 64124 CTGCTCTTTAATCGCATCAACATGATTCAAGTAAACATGCGCGTCGCCTAAAGTGTGAAT 64065 Query 97095 AAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCT 97154 ||| |||||||| |||| ||| || || || | ||||| || | || || ||||| Sbjct 64064 AAAGTCTCCAGGCTTCAAATTAGTCACGTGAGCCAGGATACAGGTGAGGAGGGAGTAGCT 64005 Query 97155 AGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGA 97214 ||| ||||| |||||||| || ||||||||||||||||||| || || | ||| || || Sbjct 64004 AGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGCACGA 63945 Query 97215 AAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTT 97274 | | ||||| | || ||||| ||| |||||| ||||| || || | |||||||| Sbjct 63944 TAATTCGCCATCGGAGACGTAAAATTGAGCCAATACGTGACAAGGAGGGAGAGCCATTTT 63885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346721706648230