Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12471 145 1e-29 seq7061 125 1e-23 seq13894 114 2e-20 seq13384 100 4e-16 >seq12471 Length=105862 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || ||||| || || ||| ||||| ||||| | | | Sbjct 72823 ATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGT 72764 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || ||||||||||| || || || || |||||| Sbjct 72763 GACACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCAA 72704 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || ||||||||||| || ||| |||| ||||| ||||| || Sbjct 72703 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGCGATTACAAC 72644 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| ||||||||||| | || || |||||||||| Sbjct 72643 ATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGGTTGAGAGGTGGTAT 72594 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || ||| | || |||| ||| Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| |||||||||||||| ||||| || ||||| |||||| Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| || ||||| || |||||| | || || ||| || || || Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || | || ||||| | | || |||| ||||| Sbjct 72415 ATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGGTAT 72366 Score = 116 bits (128), Expect = 6e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || ||||| || || || | || | || | | | Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || ||||| |||||||| || ||||| |||||| Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717 || | || || ||||| || |||||| | || ||| |||| ||| |||| ||||| || Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGC-GATTACAA 72934 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 ||||| ||||||||||| | |||||||||||||| Sbjct 72933 CATTCAGAAAGAATCAACGCTTCATTTGGTTTTACG 72898 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||| || | || |||| ||| Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| || |||||||| |||||||| || || || |||||| Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || ||||||||||| || ||| | || ||| | ||||| || Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAAC 73161 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | || ||||| | | || |||| ||||| Sbjct 73160 ATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGGTAT 73111 Score = 104 bits (114), Expect = 4e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || ||||| || || ||||| || || | || | || ||| Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || || ||||| |||||||| || || || ||||| Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || || |||||||| || ||| |||| || || || || || Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAA 73452 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||| |||||||||||| | || ||||| Sbjct 73451 CATTCAGAAAGAATCAACTCTTCACTTGGT 73422 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||| ||| | ||| | || ||| Sbjct 73858 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCAAGC 73799 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || ||||| ||||| ||||| || || || |||||| Sbjct 73798 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAA 73739 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717 || | | ||||| || ||||| || | || || | || ||| |||| || || || Sbjct 73738 CAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACACTTAGC-GACTACAA 73680 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || ||||||||||| || | || ||||| || || Sbjct 73679 CATCCAGAAAGAATCGACCTTGCATTTGGTATTGAGGTTGCGAGGAGGAAT 73629 >seq7061 Length=6671 Score = 125 bits (138), Expect = 1e-23 Identities = 181/247 (73%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 124540 TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAAT 124598 |||| || ||| | || || |||| || ||| | ||||| ||||| ||| |||| Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGA--TTGCGAGCATTC 2821 Query 124599 G-ATACAATTTCTAATTTAAAACAGAAAA--TTCAAGATAAAGAAGGTATACCACCTGAT 124655 | |||| || | ||| || | |||||| |||||||||||||||| ||| |||| || Sbjct 2822 GGATACCAT--CAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGAC 2879 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACAT-TAGAAGATTA 124714 || ||||| | || ||||| || ||||| ||||| ||| | ||| | | |||||||| Sbjct 2880 CAGCAAAGATTAATCTTTGCTGGTAAACAGTTAGAAGAT-GAAAAACGTCTCGAAGATTA 2938 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 ||||| || |||||| ||||| ||||| || ||| | ||||| |||||| | ||||| Sbjct 2939 CAATATACAGAAAGAAAACACTTTACATTTAGTATTAAGATTACGCGGTGGTTTAAAAAA 2998 Query 124775 TTCATAA 124781 | |||| Sbjct 2999 ATTATAA 3005 >seq13894 Length=1211295 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || |||| || || || |||||| | || | || | Sbjct 232402 AATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCTTC 232343 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | || |||||| || |||||||||||||| ||||| ||||| Sbjct 232342 CGATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGATCA 232283 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || ||||| || ||| | ||||| ||| || || || Sbjct 232282 GCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTACAA 232223 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| |||| || |||||| |||| ||||| Sbjct 232222 CATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTTAAGAGGCGGTAT 232172 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || |||| || || || || || | || | ||| || Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||| || || |||||||| || ||||| || ||| Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| ||||| ||||| || ||| | ||||| || ||||| || Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| ||||||||||||| || || ||||||| || Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAAT 231487 >seq13384 Length=139451 Score = 100 bits (110), Expect = 4e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 124542 CAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA--GCAAATG 124599 ||||| || ||| |||| ||| || |||| ||||| |||| |||| |||| | Sbjct 38038 CAAATTTTCGTAACGACATTAAATGGGAAAATAATAACCTTAGAAGTTGAGATGCAA--G 37981 Query 124600 ATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAAC 124659 | |||||| || ||||||| ||||| |||||||||| || ||| |||| |||| Sbjct 37980 AAACAATTGAAAACATAAAACATAAAATACAAGATAAAGGTGGATGGCCAACTGACCAAC 37921 Query 124660 AAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATA 124719 || | ||||||| || || | || || ||| || |||||| || ||||||| Sbjct 37920 AACAATTGGTTTTTGCTGGTAAGCTTTTGGAAGATTATCAAACATTGTCCGACTATAATA 37861 Query 124720 TTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||||||||| |||| ||||||| |||| Sbjct 37860 TTCAAAAAGAAGCAACCCTGCATTTAATTTT 37830 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||| ||||||| |||||||| |||||||||||||||||| | || |||||| ||||| Sbjct 40989 AAAGTTCAAGAAAAAGAAGGAATACCACCTGATCAACAACGACTAGTTTTTGGTGGAAAG 40930 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || |||||||| | |||||| | ||||| ||||| | | ||||| | ||| Sbjct 40929 CAGTTAGAGGACGATTTAACATTGGCTCATTATCATATTTCTGACAAGTCAACGATTCAT 40870 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 || |||||| | || |||| ||| Sbjct 40869 TTAGTTTTAAGATTGAGAGGCGGT 40846 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| ||||||| |||| ||||| || |||| | |||| || || || Sbjct 38253 AAGACTATAACAGGGAAAAA-ATAACCGTAATTATTGGCAGACATGAAACCATCGAAGAT 38195 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 ||||||| ||||| ||| || | ||| ||||||||||||| |||||| | | ||||| Sbjct 38194 CTAAAACATAAAATACAAAATCAGGAATGTATACCACCTGACCAACAACGATTGGTTTTT 38135 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || |||||||| || |||||| ||||| | | ||| |||||| ||||| || Sbjct 38134 GCCGGAAAACATTTGGAGGATTACAGAACAATGTCCCACTATCGTATTCAGGAAGAAGCA 38075 Query 124734 ACTTTGCATTTGGTTTT 124750 || ||||| | ||||| Sbjct 38074 ACCCTGCATATAGTTTT 38058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755316816675200