Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 145 1e-29
seq7061 125 1e-23
seq13894 114 2e-20
seq13384 100 4e-16
>seq12471
Length=105862
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| | || ||||| || || ||| ||||| ||||| | | |
Sbjct 72823 ATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGT 72764
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| || || ||||||||||| || || || || ||||||
Sbjct 72763 GACACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCAA 72704
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | | ||||| || ||||||||||| || ||| |||| ||||| ||||| ||
Sbjct 72703 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGCGATTACAAC 72644
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| ||| ||||||||||| | || || ||||||||||
Sbjct 72643 ATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGGTTGAGAGGTGGTAT 72594
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || || || || || ||| | || |||| |||
Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| ||||| |||||||||||||| ||||| || ||||| ||||||
Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || |||||||| || ||||| || |||||| | || || ||| || || ||
Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| |||||||| || | || ||||| | | || |||| |||||
Sbjct 72415 ATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGGTAT 72366
Score = 116 bits (128), Expect = 6e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || || || || ||||| || || || | || | || | | |
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| || || ||||| |||||||| || ||||| ||||||
Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717
|| | || || ||||| || |||||| | || ||| |||| ||| |||| ||||| ||
Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGC-GATTACAA 72934
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753
||||| ||||||||||| | ||||||||||||||
Sbjct 72933 CATTCAGAAAGAATCAACGCTTCATTTGGTTTTACG 72898
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || || |||||||| || | || |||| |||
Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| ||||| || |||||||| |||||||| || || || ||||||
Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | | ||||| || ||||||||||| || ||| | || ||| | ||||| ||
Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAAC 73161
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || |||||||| || | || ||||| | | || |||| |||||
Sbjct 73160 ATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGGTAT 73111
Score = 104 bits (114), Expect = 4e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || ||||| || || ||||| || || | || | || |||
Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | ||| || || ||||| |||||||| || || || |||||
Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | | || || || || |||||||| || ||| |||| || || || || ||
Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAA 73452
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747
||||| |||||||||||| | || |||||
Sbjct 73451 CATTCAGAAAGAATCAACTCTTCACTTGGT 73422
Score = 89.7 bits (98), Expect = 8e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || || |||||||| ||| | ||| | || |||
Sbjct 73858 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCAAGC 73799
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || || | || || ||||| ||||| ||||| || || || ||||||
Sbjct 73798 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAA 73739
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717
|| | | ||||| || ||||| || | || || | || ||| |||| || || ||
Sbjct 73738 CAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACACTTAGC-GACTACAA 73680
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || |||||||| || ||||||||||| || | || ||||| || ||
Sbjct 73679 CATCCAGAAAGAATCGACCTTGCATTTGGTATTGAGGTTGCGAGGAGGAAT 73629
>seq7061
Length=6671
Score = 125 bits (138), Expect = 1e-23
Identities = 181/247 (73%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 124540 TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAAT 124598
|||| || ||| | || || |||| || ||| | ||||| ||||| ||| ||||
Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGA--TTGCGAGCATTC 2821
Query 124599 G-ATACAATTTCTAATTTAAAACAGAAAA--TTCAAGATAAAGAAGGTATACCACCTGAT 124655
| |||| || | ||| || | |||||| |||||||||||||||| ||| |||| ||
Sbjct 2822 GGATACCAT--CAAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGAC 2879
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACAT-TAGAAGATTA 124714
|| ||||| | || ||||| || ||||| ||||| ||| | ||| | | ||||||||
Sbjct 2880 CAGCAAAGATTAATCTTTGCTGGTAAACAGTTAGAAGAT-GAAAAACGTCTCGAAGATTA 2938
Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
||||| || |||||| ||||| ||||| || ||| | ||||| |||||| | |||||
Sbjct 2939 CAATATACAGAAAGAAAACACTTTACATTTAGTATTAAGATTACGCGGTGGTTTAAAAAA 2998
Query 124775 TTCATAA 124781
| ||||
Sbjct 2999 ATTATAA 3005
>seq13894
Length=1211295
Score = 114 bits (126), Expect = 2e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | || || |||| || || || |||||| | || | || |
Sbjct 232402 AATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCTTC 232343
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| || | || |||||| || |||||||||||||| ||||| |||||
Sbjct 232342 CGATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGATCA 232283
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | | |||||||| || || ||||| || ||| | ||||| ||| || || ||
Sbjct 232282 GCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTACAA 232223
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || ||||| || | ||| |||| || |||||| |||| |||||
Sbjct 232222 CATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTTAAGAGGCGGTAT 232172
Score = 113 bits (124), Expect = 7e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || |||| || || || || || | || | ||| ||
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || |||||| || || |||||||| || ||||| || |||
Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | |||||||| ||||| ||||| || ||| | ||||| || ||||| ||
Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || ||||| ||| ||||||||||||| || || ||||||| ||
Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAAT 231487
>seq13384
Length=139451
Score = 100 bits (110), Expect = 4e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 124542 CAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA--GCAAATG 124599
||||| || ||| |||| ||| || |||| ||||| |||| |||| |||| |
Sbjct 38038 CAAATTTTCGTAACGACATTAAATGGGAAAATAATAACCTTAGAAGTTGAGATGCAA--G 37981
Query 124600 ATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAAC 124659
| |||||| || ||||||| ||||| |||||||||| || ||| |||| ||||
Sbjct 37980 AAACAATTGAAAACATAAAACATAAAATACAAGATAAAGGTGGATGGCCAACTGACCAAC 37921
Query 124660 AAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATA 124719
|| | ||||||| || || | || || ||| || |||||| || |||||||
Sbjct 37920 AACAATTGGTTTTTGCTGGTAAGCTTTTGGAAGATTATCAAACATTGTCCGACTATAATA 37861
Query 124720 TTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750
||||||||||| |||| ||||||| ||||
Sbjct 37860 TTCAAAAAGAAGCAACCCTGCATTTAATTTT 37830
Score = 93.3 bits (102), Expect = 6e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
||| ||||||| |||||||| |||||||||||||||||| | || |||||| |||||
Sbjct 40989 AAAGTTCAAGAAAAAGAAGGAATACCACCTGATCAACAACGACTAGTTTTTGGTGGAAAG 40930
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
|| |||||||| | |||||| | ||||| ||||| | | ||||| | |||
Sbjct 40929 CAGTTAGAGGACGATTTAACATTGGCTCATTATCATATTTCTGACAAGTCAACGATTCAT 40870
Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766
|| |||||| | || |||| |||
Sbjct 40869 TTAGTTTTAAGATTGAGAGGCGGT 40846
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/197 (71%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613
||||| ||||||| |||| ||||| || |||| | |||| || || ||
Sbjct 38253 AAGACTATAACAGGGAAAAA-ATAACCGTAATTATTGGCAGACATGAAACCATCGAAGAT 38195
Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673
||||||| ||||| ||| || | ||| ||||||||||||| |||||| | | |||||
Sbjct 38194 CTAAAACATAAAATACAAAATCAGGAATGTATACCACCTGACCAACAACGATTGGTTTTT 38135
Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733
|| |||||||| || |||||| ||||| | | ||| |||||| ||||| ||
Sbjct 38134 GCCGGAAAACATTTGGAGGATTACAGAACAATGTCCCACTATCGTATTCAGGAAGAAGCA 38075
Query 124734 ACTTTGCATTTGGTTTT 124750
|| ||||| | |||||
Sbjct 38074 ACCCTGCATATAGTTTT 38058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755316816675200
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