Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq13641 114 1e-20
seq14070 105 8e-18
seq13912 105 8e-18
seq13653 105 8e-18
seq7566 102 9e-17
seq14290 96.9 4e-15
seq4438 96.9 4e-15
seq4332 96.9 4e-15
seq12471 95.1 1e-14
>seq13641
Length=1019812
Score = 114 bits (126), Expect = 1e-20
Identities = 78/87 (90%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 60054 ATGAAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111
|| ||||||| |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 599180 ATTAAAAATTAATTCTCCCCGACAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGG 599239
Query 60112 CATACTCACCACTATACTACCGAGGAT 60138
||||| |||||||||||| |||||||
Sbjct 599240 GATACTAACCACTATACTATCGAGGAT 599266
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 583755 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 583696
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 583695 TATACTATCGAGGA 583682
Score = 98.7 bits (108), Expect = 1e-15
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118
|||| | |||| || | ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 584644 AAATATACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTA 584703
Query 60119 ACCACTATACTACCGAGGA 60137
|||||||||||| ||||||
Sbjct 584704 ACCACTATACTATCGAGGA 584722
>seq14070
Length=708083
Score = 105 bits (116), Expect = 8e-18
Identities = 73/83 (88%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | ||||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 296663 AAAAAGTGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 296604
Query 60117 TCACCACTATACTACCGAGGATT 60139
| |||||||||||| ||||||||
Sbjct 296603 TAACCACTATACTATCGAGGATT 296581
>seq13912
Length=681751
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||||||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 391907 AAAAATTTACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 391966
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||| ||||||
Sbjct 391967 TAACCACTATACTATCGAGGA 391987
>seq13653
Length=227863
Score = 105 bits (116), Expect = 8e-18
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 167520 CTCCCCGACAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 167579
Query 60126 TACTACCGAGGAT-TGAA 60142
||||| ||||||| ||||
Sbjct 167580 TACTATCGAGGATATGAA 167597
>seq7566
Length=248414
Score = 102 bits (112), Expect = 9e-17
Identities = 71/81 (88%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 99384 AAAAATTGCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 99443
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||| ||||||
Sbjct 99444 TAACCACTATACTATCGAGGA 99464
>seq14290
Length=91518
Score = 96.9 bits (106), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 30592 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 30651
Query 60126 TACTACCGAGGA-TTGAA 60142
||||| |||||| |||||
Sbjct 30652 TACTATCGAGGACTTGAA 30669
>seq4438
Length=69196
Score = 96.9 bits (106), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 12558 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 12617
Query 60126 TACTACCGAGGA-TTGAA 60142
||||| |||||| |||||
Sbjct 12618 TACTATCGAGGACTTGAA 12635
>seq4332
Length=215406
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 174334 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 174275
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 174274 ATACTATCGAGGA 174262
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 174942 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 174883
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 174882 TATACTATCGAGGA 174869
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 174657 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 174598
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 174597 ATACTATCGAGGA 174585
>seq12471
Length=105862
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
|||||||| || | ||| ||||||||||| || || || || || ||||| ||
Sbjct 73631 TCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCT 73690
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || || |||| || |||||||| |||||||| || | |||||| || |||| ||
Sbjct 73691 AAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGG 73750
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134
| | ||||| ||| ||| | || | || | || | | ||||||||| | ||||
Sbjct 73751 AATTCCTTCCTTATCC-TGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCA 73809
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || | || || ||||| || || || || || ||||| || |||||
Sbjct 73810 CCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
Score = 86.0 bits (94), Expect = 7e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| || || | |||||||||| ||| |||||||| || |||||||| |
Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || || | || || | || || |||||||| || | ||||| || || | ||
Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| | ||| || || ||| || ||||| | | | |||||| || | ||| ||
Sbjct 72717 ATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACC 72776
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| ||||| || | ||||| || |||||||||||
Sbjct 72777 TCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571712249754920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |