Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq7061 116 6e-21
seq13894 91.5 2e-13
seq12471 89.7 8e-13
>seq7061
Length=6671
Score = 116 bits (128), Expect = 6e-21
Identities = 110/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | | ||||||||| ||||||||||| |||||| |||||| ||||||
Sbjct 2989 CCACCGCGTAATCTTAATACTAAATGTAAAGTGTTTTCTTTCTGTATATTGTAATCTTCG 2930
Query 146111 AGA-GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||| ||| | | ||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 2929 AGACGTTTTTC-ATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGC 2871
Query 146170 AATTCCTTCTTTATCTTG 146187
|||||||||||||||||
Sbjct 2870 TATTCCTTCTTTATCTTG 2853
>seq13894
Length=1211295
Score = 91.5 bits (100), Expect = 2e-13
Identities = 125/183 (68%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|| || |||||||| | |||| || ||| || | |||||| || ||||| ||||| |
Sbjct 231764 ATGTTGTAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGC 231823
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215
||||||||||||||||| |||||||| ||||| |||
Sbjct 231824 TGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTA 231883
Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275
|| ||| ||| ||||| || ||||| || || || ||||| ||||| | ||| || |||
Sbjct 231884 TCGGAAGGTTCGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGC 231943
Query 146276 ATT 146278
|||
Sbjct 231944 ATT 231946
Score = 86.0 bits (94), Expect = 9e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125
||||||| ||| | || ||||| || || || || || || | |||| || |||
Sbjct 232190 AATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCT 232249
Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185
|| ||||| || || |||||||| |||| |||||||||||| || || |||||||||||
Sbjct 232250 TCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCC 232309
Query 146186 TG 146187
||
Sbjct 232310 TG 232311
>seq12471
Length=105862
Score = 89.7 bits (98), Expect = 8e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| |||| | || ||||||||||| || || |||||||| || || || ||
Sbjct 73630 TTCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGC 73689
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||| || | || || || | || |||||||| |||||||||| || ||||| ||||
Sbjct 73690 TAAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAG 73749
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||||||||| ||||| ||
Sbjct 73750 GAATTCCTTCCTTATCCTG 73768
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| ||||| | || | ||||| || | || |||||||| || || |||||
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | | ||| || |||||||||||||| |||||||| | || ||||||||||||
Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233
Query 146171 ATTCCTTCTTTATCTTG 146187
|| |||||||| |||||
Sbjct 73234 ATCCCTTCTTTGTCTTG 73250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743389414554880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |