Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7061 116 6e-21 seq13894 91.5 2e-13 seq12471 89.7 8e-13 >seq7061 Length=6671 Score = 116 bits (128), Expect = 6e-21 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | | ||||||||| ||||||||||| |||||| |||||| |||||| Sbjct 2989 CCACCGCGTAATCTTAATACTAAATGTAAAGTGTTTTCTTTCTGTATATTGTAATCTTCG 2930 Query 146111 AGA-GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||| | | ||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 2929 AGACGTTTTTC-ATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGC 2871 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 2870 TATTCCTTCTTTATCTTG 2853 >seq13894 Length=1211295 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/183 (68%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || |||||||| | |||| || ||| || | |||||| || ||||| ||||| | Sbjct 231764 ATGTTGTAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGC 231823 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||||||||||||||| |||||||| ||||| ||| Sbjct 231824 TGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTA 231883 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || ||| ||| ||||| || ||||| || || || ||||| ||||| | ||| || ||| Sbjct 231884 TCGGAAGGTTCGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGC 231943 Query 146276 ATT 146278 ||| Sbjct 231944 ATT 231946 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||| ||| | || ||||| || || || || || || | |||| || ||| Sbjct 232190 AATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCT 232249 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || ||||| || || |||||||| |||| |||||||||||| || || ||||||||||| Sbjct 232250 TCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCC 232309 Query 146186 TG 146187 || Sbjct 232310 TG 232311 >seq12471 Length=105862 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| | || ||||||||||| || || |||||||| || || || || Sbjct 73630 TTCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGC 73689 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || | || || || | || |||||||| |||||||||| || ||||| |||| Sbjct 73690 TAAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAG 73749 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 73750 GAATTCCTTCCTTATCCTG 73768 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||||| || | || |||||||| || || ||||| Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || |||||||||||||| |||||||| | || |||||||||||| Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 73234 ATCCCTTCTTTGTCTTG 73250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743389414554880