Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7637 203 3e-47 seq13722 118 8e-22 >seq7637 Length=48035 Score = 203 bits (224), Expect = 3e-47 Identities = 441/652 (68%), Gaps = 21/652 (3%) Strand=Plus/Minus Query 19977 AGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAG 20036 |||| ||||| ||| ||||| |||||| |||||||||||||| | || || || | || Sbjct 7996 AGATAGAACCAAAACAGGAACTTTATCTTTATTTGGAATGCAAGCGCGGTACAATCTCAG 7937 Query 20037 AAA---TGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGA 20093 ||| ||||||||| ||| | |||||||| || || || ||| || || || || || Sbjct 7936 AAACAATGAATTTCCATTACTCACTACGAAGCGTGTTTTCTGGCGCGGTGTAGTGGAGGA 7877 Query 20094 GTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGA---AAAAGGAGT 20150 ||| | ||||| || ||||| || || | | || || || | ||||||||| Sbjct 7876 GTTGCTGTGGTTCATAAAAGG--CAGCACAGAC-ACGAAGGAATTAAATTCAAAAGGAGT 7820 Query 20151 TAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAAT--GGATTTGACAAC 20208 || ||||||| || | || | ||| |||| || || ||| ||| | ||| | Sbjct 7819 GAACATTTGGAACGGAAATAGTTCTCGCGAATTCCTAGAC--CAAGTCGGACTAAACAGC 7762 Query 20209 CGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAA 20268 | ||| || ||| |||| || ||||| || || |||||| | ||||| ||||| || Sbjct 7761 AACCCAGAAGGCGATGTGGGACCCGTGTACGGCTTCCAATGGCGGCATTTCGGAGCGAAA 7702 Query 20269 TATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT 20328 ||| | | || | |||| ||||||| | |||||||| || |||| || Sbjct 7701 TATAAAGGCGCAAATGCCGATTACACGCAACAAGGATTTGATCAATTGGAACATGTCATC 7642 Query 20329 AATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAA 20388 |||||||| || || || ||||||| | || || | | | |||||| | | Sbjct 7641 GATTTAATTCGAAATAATCCCTTCGACAGAGGCATCATCATGTCTTCGTGGAACCCATCA 7582 Query 20389 GATGTGCCTTTAATGGCTTTGCCTCCATGTCA--TAT--GCTATGCCAATTTTACGTTGC 20444 || | | ||||||| | | ||| ||||| ||| ||| ||||||||||| | Sbjct 7581 GACTTATCGAAAATGGCTCTCCGTCCTTGTCACGTATTGGCT----CAATTTTACGTCTC 7526 Query 20445 TAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCC 20504 | ||||| ||||| || |||| || ||||| |||||||||||||| || || || Sbjct 7525 CGAAGGCGAATTATCGTGCCAGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCC 7466 Query 20505 TTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 |||||| || || || || | || || || | ||| | || || || || |||| || Sbjct 7465 TTTCAACATCGCTAGCTACTCCCTCCTCACTTGTATCCTGGCTCACGTGACTAATTTGAA 7406 Query 20565 AACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | || ||||| | |||| |||| ||||| ||| ||||| | |||||| Sbjct 7405 GCCTGGAGACTTTATTCACAGTTTAGGCGACGCACATGTTTACTTGAATCAT 7354 >seq13722 Length=82832 Score = 118 bits (130), Expect = 8e-22 Identities = 160/221 (72%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 20400 AATGGCTTTGCCTCCATGTCA--TAT--GCTATGCCAATTTTACGTTGCTAATAATGAAT 20455 ||||||| | ||||| ||||| ||| ||| ||||||||||| | || |||| Sbjct 63887 AATGGCTCTCCCTCCTTGTCACGTATTGGCT----CAATTTTACGTCTCCGATGGCGAAT 63942 Query 20456 TGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTG 20515 | ||||| || |||| || ||||| |||||||||||||| || || |||||||| || | Sbjct 63943 TATCGTGCCAGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCCTTTCAACATCG 64002 Query 20516 CAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACT 20575 | || || | || || || | ||| | || || || || |||| || | || |||| Sbjct 64003 CTAGCTACTCCCTCCTCACCTGTATCCTGGCTCACGTGACTAATTTGAAGCCTGGAGACT 64062 Query 20576 TAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | | ||||| |||| ||||||||| ||||| | |||||| Sbjct 64063 TTATTCACACTTTAGGCGACGCGCATGTTTACTTGAATCAT 64103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399112293954355