Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq7637 203 3e-47
seq13722 118 8e-22
>seq7637
Length=48035
Score = 203 bits (224), Expect = 3e-47
Identities = 441/652 (68%), Gaps = 21/652 (3%)
Strand=Plus/Minus
Query 19977 AGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAG 20036
|||| ||||| ||| ||||| |||||| |||||||||||||| | || || || | ||
Sbjct 7996 AGATAGAACCAAAACAGGAACTTTATCTTTATTTGGAATGCAAGCGCGGTACAATCTCAG 7937
Query 20037 AAA---TGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGA 20093
||| ||||||||| ||| | |||||||| || || || ||| || || || || ||
Sbjct 7936 AAACAATGAATTTCCATTACTCACTACGAAGCGTGTTTTCTGGCGCGGTGTAGTGGAGGA 7877
Query 20094 GTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGA---AAAAGGAGT 20150
||| | ||||| || ||||| || || | | || || || | |||||||||
Sbjct 7876 GTTGCTGTGGTTCATAAAAGG--CAGCACAGAC-ACGAAGGAATTAAATTCAAAAGGAGT 7820
Query 20151 TAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAAT--GGATTTGACAAC 20208
|| ||||||| || | || | ||| |||| || || ||| ||| | ||| |
Sbjct 7819 GAACATTTGGAACGGAAATAGTTCTCGCGAATTCCTAGAC--CAAGTCGGACTAAACAGC 7762
Query 20209 CGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAA 20268
| ||| || ||| |||| || ||||| || || |||||| | ||||| ||||| ||
Sbjct 7761 AACCCAGAAGGCGATGTGGGACCCGTGTACGGCTTCCAATGGCGGCATTTCGGAGCGAAA 7702
Query 20269 TATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT 20328
||| | | || | |||| ||||||| | |||||||| || |||| ||
Sbjct 7701 TATAAAGGCGCAAATGCCGATTACACGCAACAAGGATTTGATCAATTGGAACATGTCATC 7642
Query 20329 AATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAA 20388
|||||||| || || || ||||||| | || || | | | |||||| | |
Sbjct 7641 GATTTAATTCGAAATAATCCCTTCGACAGAGGCATCATCATGTCTTCGTGGAACCCATCA 7582
Query 20389 GATGTGCCTTTAATGGCTTTGCCTCCATGTCA--TAT--GCTATGCCAATTTTACGTTGC 20444
|| | | ||||||| | | ||| ||||| ||| ||| ||||||||||| |
Sbjct 7581 GACTTATCGAAAATGGCTCTCCGTCCTTGTCACGTATTGGCT----CAATTTTACGTCTC 7526
Query 20445 TAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCC 20504
| ||||| ||||| || |||| || ||||| |||||||||||||| || || ||
Sbjct 7525 CGAAGGCGAATTATCGTGCCAGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCC 7466
Query 20505 TTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564
|||||| || || || || | || || || | ||| | || || || || |||| ||
Sbjct 7465 TTTCAACATCGCTAGCTACTCCCTCCTCACTTGTATCCTGGCTCACGTGACTAATTTGAA 7406
Query 20565 AACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616
| || ||||| | |||| |||| ||||| ||| ||||| | ||||||
Sbjct 7405 GCCTGGAGACTTTATTCACAGTTTAGGCGACGCACATGTTTACTTGAATCAT 7354
>seq13722
Length=82832
Score = 118 bits (130), Expect = 8e-22
Identities = 160/221 (72%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 20400 AATGGCTTTGCCTCCATGTCA--TAT--GCTATGCCAATTTTACGTTGCTAATAATGAAT 20455
||||||| | ||||| ||||| ||| ||| ||||||||||| | || ||||
Sbjct 63887 AATGGCTCTCCCTCCTTGTCACGTATTGGCT----CAATTTTACGTCTCCGATGGCGAAT 63942
Query 20456 TGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTG 20515
| ||||| || |||| || ||||| |||||||||||||| || || |||||||| || |
Sbjct 63943 TATCGTGCCAGCTGTACCAGCGATCAGCTGATATGGGACTCGGAGTGCCTTTCAACATCG 64002
Query 20516 CAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACT 20575
| || || | || || || | ||| | || || || || |||| || | || ||||
Sbjct 64003 CTAGCTACTCCCTCCTCACCTGTATCCTGGCTCACGTGACTAATTTGAAGCCTGGAGACT 64062
Query 20576 TAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616
| | ||||| |||| ||||||||| ||||| | ||||||
Sbjct 64063 TTATTCACACTTTAGGCGACGCGCATGTTTACTTGAATCAT 64103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399112293954355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |