Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 127 2e-24
seq13244 98.7 1e-15
seq12995 93.3 4e-14
>seq13338
Length=646138
Score = 127 bits (140), Expect = 2e-24
Identities = 229/332 (69%), Gaps = 2/332 (1%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||| ||||| || || | |||||| || || ||||| ||||||| || ||||| |
Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
||| ||||||||||| |||||||| ||||||||||| || || || || || ||||| |
Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140
Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405
| || | ||| || || |||| || ||||||| ||||| | |||||| |
Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200
Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT-GTTCCTTCTCTTTA 14464
|| || | | | ||| || || || || || || |||| ||| ||| || |
Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATCG 454260
Query 14465 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14524
|||| ||||| |||| || | | ||| ||||| || || || || || || ||
Sbjct 454261 TGTCTTG-GATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319
Query 14525 GCTATCTGAAAACCATAAAAACATCTAGCTTC 14556
|| || || || ||||||||| | | ||||||
Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTC 454351
>seq13244
Length=114396
Score = 98.7 bits (108), Expect = 1e-15
Identities = 228/339 (67%), Gaps = 10/339 (3%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||| ||||| || || | |||||| || || ||||| ||||||| || ||||| |
Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554
Query 14286 ttAACCAAAATATTGCAGCGA-----ATGATCCGGAAAAGAATATTCCCTCAACTGCAGC 14340
||| ||||||||| | |||| |||| ||||||||||| || || || || || ||
Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614
Query 14341 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14400
|| || || | ||| || || || | || ||||||| ||||| | ||||||
Sbjct 3615 GAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674
Query 14401 TTCAGAtttttttttAATAAAATCCATTGT-TTCAATAGCATTAAATAAAT-GTTCCTTC 14458
| || || | | || ||| || || ||| | ||||| |||| || |||
Sbjct 3675 CAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTT 3734
Query 14459 TC-TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTT 14517
|| | || || | ||||| |||| || | | ||| ||||| ||||| | || ||
Sbjct 3735 TCATCGTGTCCTGG--ATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATT 3792
Query 14518 TTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556
|| || || || || || ||||||||| | | ||||||
Sbjct 3793 CTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 3831
>seq12995
Length=433444
Score = 93.3 bits (102), Expect = 4e-14
Identities = 87/108 (81%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 14531 TGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGC 14589
||||| ||||||||||| || ||||||| |||||| || ||| | || |||||| |
Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAA-TCTTTCCAC 320998
Query 14590 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATAT 14637
|||||||||||||| || |||||||| || |||||||| ||||| ||
Sbjct 320997 TAAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAAT 320950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482256733852520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |