Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq13338 127 2e-24 seq13244 98.7 1e-15 seq12995 93.3 4e-14 >seq13338 Length=646138 Score = 127 bits (140), Expect = 2e-24 Identities = 229/332 (69%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| || || | |||||| || || ||||| ||||||| || ||||| | Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||||||||||| |||||||| ||||||||||| || || || || || ||||| | Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | || | ||| || || |||| || ||||||| ||||| | |||||| | Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT-GTTCCTTCTCTTTA 14464 || || | | | ||| || || || || || || |||| ||| ||| || | Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATCG 454260 Query 14465 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14524 |||| ||||| |||| || | | ||| ||||| || || || || || || || Sbjct 454261 TGTCTTG-GATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319 Query 14525 GCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 || || || || ||||||||| | | |||||| Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTC 454351 >seq13244 Length=114396 Score = 98.7 bits (108), Expect = 1e-15 Identities = 228/339 (67%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| || || | |||||| || || ||||| ||||||| || ||||| | Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554 Query 14286 ttAACCAAAATATTGCAGCGA-----ATGATCCGGAAAAGAATATTCCCTCAACTGCAGC 14340 ||| ||||||||| | |||| |||| ||||||||||| || || || || || || Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614 Query 14341 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14400 || || || | ||| || || || | || ||||||| ||||| | |||||| Sbjct 3615 GAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674 Query 14401 TTCAGAtttttttttAATAAAATCCATTGT-TTCAATAGCATTAAATAAAT-GTTCCTTC 14458 | || || | | || ||| || || ||| | ||||| |||| || ||| Sbjct 3675 CAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTT 3734 Query 14459 TC-TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTT 14517 || | || || | ||||| |||| || | | ||| ||||| ||||| | || || Sbjct 3735 TCATCGTGTCCTGG--ATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATT 3792 Query 14518 TTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 || || || || || || ||||||||| | | |||||| Sbjct 3793 CTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 3831 >seq12995 Length=433444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 14531 TGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGC 14589 ||||| ||||||||||| || ||||||| |||||| || ||| | || |||||| | Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAA-TCTTTCCAC 320998 Query 14590 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATAT 14637 |||||||||||||| || |||||||| || |||||||| ||||| || Sbjct 320997 TAAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAAT 320950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482256733852520