Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq13894 109 4e-19 seq12471 105 5e-18 >seq13894 Length=1211295 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||||| || ||||| || || ||||||||||||| | ||| | |||||| Sbjct 232192 TACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTC 232251 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||| ||||||||| | || | || ||| |||||| || | ||||| ||||| Sbjct 232252 CAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTG 232311 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| ||| || | | ||| || || |||||| ||| | || ||| | || Sbjct 232312 GATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTT 232371 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || ||||| |||||||| |||||||| Sbjct 232372 ACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||||| ||||| ||||| || |||||||| |||| || || | |||| Sbjct 231962 AGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCT 232021 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || ||||| |||| | || ||| ||||| || | ||| || || || Sbjct 232022 TCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCT 232081 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | ||| ||||| || ||| ||| | |||||| || Sbjct 232082 TGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTT 232141 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || || ||||| |||||||| ||||| Sbjct 232142 TTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || || ||||| || || |||||||| |||| || ||| | ||||||| Sbjct 231508 ACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCC 231567 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || |||||| | || | | |||||| || || | |||||| || || Sbjct 231568 AATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGG 231627 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| |||||| | ||| ||||| || ||| ||| | ||| ||| | || Sbjct 231628 ATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTT 231687 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || ||||| || ||||| ||||| Sbjct 231688 CCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 >seq12471 Length=105862 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||| ||||||||||| ||||||||||| ||| | ||| || |||||| Sbjct 72904 ACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTCG 72963 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | |||||| || ||| |||| || | |||||||| || | ||||| || || Sbjct 72964 AGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGG 73023 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | || ||||| | | | | |||||||| |||||| ||| | |||||| | || Sbjct 73024 ATCT-TGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTT 73082 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| ||||| || || |||||||| Sbjct 73083 GCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| ||||||||||| ||||||||||||||| || || || |||| Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || || |||| | | |||||||| || | ||||| || || Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | ||| || |||| |||||| ||| | ||| ||| | Sbjct 73539 TGGATCT-TGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGT 73597 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| || || | |||||| || || || |||||| Sbjct 73598 TTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379275857844555