Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 109 4e-19
seq12471 105 5e-18
>seq13894
Length=1211295
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175
||||| ||||| || ||||| || || ||||||||||||| | ||| | ||||||
Sbjct 232192 TACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTC 232251
Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235
|||||| ||||||||| | || | || ||| |||||| || | ||||| |||||
Sbjct 232252 CAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTG 232311
Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|||| ||| || | | ||| || || |||||| ||| | || ||| | ||
Sbjct 232312 GATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTT 232371
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| || ||||| |||||||| ||||||||
Sbjct 232372 ACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
Score = 95.1 bits (104), Expect = 9e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
||||| | ||||| ||||| ||||| || |||||||| |||| || || | ||||
Sbjct 231962 AGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCT 232021
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||||||| || ||||| |||| | || ||| ||||| || | ||| || || ||
Sbjct 232022 TCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCT 232081
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|||| ||| || | | ||| ||||| || ||| ||| | |||||| ||
Sbjct 232082 TGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTT 232141
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| || || || ||||| |||||||| |||||
Sbjct 232142 TTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| || || || ||||| || || |||||||| |||| || ||| | |||||||
Sbjct 231508 ACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCC 231567
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||| || |||||| | || | | |||||| || || | |||||| || ||
Sbjct 231568 AATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGG 231627
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|||| |||||| | ||| ||||| || ||| ||| | ||| ||| | ||
Sbjct 231628 ATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTT 231687
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || ||||| || ||||| |||||
Sbjct 231688 CCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
>seq12471
Length=105862
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||||| ||||||||||| ||||||||||| ||| | ||| || ||||||
Sbjct 72904 ACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTCG 72963
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
| |||||| || ||| |||| || | |||||||| || | ||||| || ||
Sbjct 72964 AGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGG 73023
Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|| | | || ||||| | | | | |||||||| |||||| ||| | |||||| | ||
Sbjct 73024 ATCT-TGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTT 73082
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| |||| ||||| || || ||||||||
Sbjct 73083 GCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| |||||| ||||||||||| ||||||||||||||| || || || ||||
Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
||||||||||| || || |||| | | |||||||| || | ||||| || ||
Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | | || || || | ||| || |||| |||||| ||| | ||| ||| |
Sbjct 73539 TGGATCT-TGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGT 73597
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| || || | |||||| || || || ||||||
Sbjct 73598 TTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379275857844555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |