Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 116 3e-21
seq12471 91.5 1e-13
>seq13894
Length=1211295
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| || || ||||| |||||||| || || || ||| |||| |||||| |
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | || | ||| |||| ||||| | ||||||||| | || |||||
Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||||||||| | |||||| || ||| |||||||| | || || |||||||| |
Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| ||||| || | || || ||||| || || |||||| | || ||
Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGG 231490
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| ||||| ||||||||||| || ||||| || || | || |||||| |
Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | |||| ||||||| ||||| | ||||| ||| | || || |||
Sbjct 232113 GACACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAG 232054
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||| || || | ||||| || ||| |||||||| | ||| || |||||||| |
Sbjct 232053 CAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAAC 231994
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| ||||||||| | || |||||| | || | || ||| | || ||
Sbjct 231993 ATCCAGAAAGAGTCAACCCTTCATCTTGTACTGCGTTTGAGAGGTGG 231947
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| ||||| |||||||||||||| || || ||||| |||| ||||| | |
Sbjct 232401 ATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCTTCC 232342
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | | |||| || |||| ||||| | |||||||| | || || |||
Sbjct 232341 GATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGATCAG 232282
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||| ||||| | ||||||||| ||| |||||||| | || | ||| |||| |
Sbjct 232281 CAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTACAAC 232222
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATT 25049
|| ||||| || | || |||||| | || || || ||
Sbjct 232221 ATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGTTT 232184
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/229 (69%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| || || ||||| ||||| || || || || || | || |||||| | |
Sbjct 231945 ATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTCC 231886
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | | |||| || |||| ||||| | ||||||||| | || || |||
Sbjct 231885 GATACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAG 231826
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|| ||||| || | ||| || ||||||||||||||| | || || ||||||| |
Sbjct 231825 CAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGATTACAAC 231766
Query 25012 ATACAGAAA-GAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
|| |||||| || | || |||||| | ||| | || ||| | || |||
Sbjct 231765 ATCCAGAAAGGAATCGACCCTTCATCTTGTGCTGCGTTTGAGAGGCGGT 231717
>seq12471
Length=105862
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || || |||||| | || ||||| || || || | || ||||| | ||
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | | |||| ||| || | || || | |||||||| | || || ||
Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|| ||| |||| | ||| || |||||||| |||||| || | | |||||||| |
Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGCGATTACAAC 72933
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046
|| |||||||| | ||||||||||| || |||||
Sbjct 72932 ATTCAGAAAGAATCAACGCTTCATTTGGTTTTACG 72898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418228859398880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |