Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7637 138 2e-27 seq13722 102 2e-16 >seq7637 Length=48035 Score = 138 bits (152), Expect = 2e-27 Identities = 448/683 (66%), Gaps = 16/683 (2%) Strand=Plus/Minus Query 35149 GGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCT 35208 ||| |||||||| |||||||||| |||| | |||||| ||| | ||| | ||| Sbjct 7999 GGAAGATAGAACCAAAACAGGAACTTTATCTTTATTTGGAATGCAAGCGCGGTACAATCT 7940 Query 35209 TCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGA 35268 || || | ||||| | |||||||| ||| |||||||| | || || ||||| Sbjct 7939 CAGAAACAATGAATTTCCATTACTCACTACGAAGCGTGTTTTCTGGCGCGGTGTAGTGGA 7880 Query 35269 AGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGC--CAAGAAGAAG 35326 || | ||||||||| | |||| |||||| | || ||||| ||| ||| || Sbjct 7879 GGAGTTGCTGTGGTTCATAAAAGGCAGCACAGACACGAAGGAATTAAATTCAA-AAGGAG 7821 Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC--AGTAGAGGGTTATACG 35384 | |||| ||||||| ||| | || || ||||| | ||| ||| | | || || Sbjct 7820 TGA-ACATTTGGAACGGAAATAGTTCTCGCGAATTCCTAGACCAAGTCG--GACTAAACA 7764 Query 35385 ATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTG 35444 | |||| || ||| |||||||||| ||||| ||||||||||| ||||| || || Sbjct 7763 GCAACCCAGAAGGCGATGTGGGACCCGTGTACGGCTTCCAATGGCGGCATTTCGGAGCGA 7704 Query 35445 AATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATAC 35504 ||||| | | | ||||||| || | | || |||||||||||| || | Sbjct 7703 AATATAAAGGCGCAAATGCCGATTACACGCAACAAGGATTTGATCAATTGGAACATGTCA 7644 Query 35505 TAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTA 35564 | | | || | ||||| || ||| | || || ||| | | ||||| || | Sbjct 7643 TCGATTTAATTCGAAATAATCCCTTCGACAGAGGCATCATCATGTCTTCGTGGAA-CCCA 7585 Query 35565 TGGATCTTCAC-CTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCT 35623 | ||| | |||||||| | ||| || ||| | ||||||||||| || | Sbjct 7584 TCAGACTTATCGAAAATGGCTCTCCGTCCTTGTCACGTATTGGCTCAATTTTACGTCTCC 7525 Query 35624 AATGGAGAATTGTCGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGC 35681 | || ||||| ||||||||| |||| |||||| ||| || ||| || | || |||| Sbjct 7524 GAAGGCGAATTATCGTGCCAGCTGTACCAGCGATCAGCTGATATG--GGACTCGGAGTGC 7467 Query 35682 CCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAA 35741 | ||||| || || ||||| || || ||| | | |||| || | | | Sbjct 7466 CTTTCAACATCGCTAGCTACTCCCTCCTCACTTGTATCCTGGCTCACGTGACTAATTTGA 7407 Query 35742 AACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGG 35801 | || ||||| ||||| | || | | || |||||||| |||| | || |||| | Sbjct 7406 AGCCTGGAGACTTTATTCACAGTTTAGGCGACGCACATGTTTACTTGAATCATGTTGATG 7347 Query 35802 TG-TTAAAGAAGCAGTTGTGCCG 35823 | |||||| |||||||| |||| Sbjct 7346 CGATTAAAG-AGCAGTTGAGCCG 7325 >seq13722 Length=82832 Score = 102 bits (112), Expect = 2e-16 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 ||||| | |||||||| ||| | |||||||| | || || ||||| || | ||||| Sbjct 63447 TTCCATTACTCACTACGAAGCGAGTTTTCTGGCGTGGTGTAGTGGAGGAGTTGCTGTGGT 63506 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTGGC--CAAGAAGAAGATACACATCTGGAA 35340 |||| || |||| |||||| | || ||||| ||| ||| || | | || ||| | Sbjct 63507 TCATAAGAGGCAGCACAGACACGAAGGAATTAAATTCAA-AAGGAGTGAAA-ATTTGGGA 63564 Query 35341 CGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGA 35400 || ||| | || || ||||| | ||| | || || || | |||| || || Sbjct 63565 CGGAAATAGTTCCCGCGAATTCCTAGACCGAGTCGGACTAAACAGCAATCCAGAAGGCGA 63624 Query 35401 TTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT 35449 | |||||||||| ||||| ||||||||||| |||||||| || |||||| Sbjct 63625 TGTGGGACCCGTGTACGGCTTCCAATGGCGGCATTTTGGAGCGGAATAT 63673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989397123555745