Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 122 8e-23
seq477 111 1e-19
seq13458 98.7 9e-16
seq12995 98.7 9e-16
seq13244 89.7 5e-13
>seq13338
Length=646138
Score = 122 bits (134), Expect = 8e-23
Identities = 232/341 (68%), Gaps = 3/341 (1%)
Strand=Plus/Plus
Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701
|||| ||| | |||||||| || |||| ||| ||| || || |||||||||||||
Sbjct 454011 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 454070
Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761
|| ||||| |||| ||||||||| | || |||||||| |||||||| || || || ||
Sbjct 454071 CCGCGTTTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACG 454130
Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTG 11818
|| ||||| || | | || || || | || | ||| | ||||| |
Sbjct 454131 GCCGCAAAAGCGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGA 454190
Query 11819 GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT 11878
||||| || ||||| || ||| ||| || || || ||||| || |||| ||
Sbjct 454191 GCCCACAACGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTT 454250
Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938
||| || | ||| | || |||| ||| || | || ||||| || ||||| |||
Sbjct 454251 CTTTTCATCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATA 454310
Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979
|| || || || ||||| |||||||| ||| | || || ||
Sbjct 454311 TTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 454351
>seq477
Length=28440
Score = 111 bits (122), Expect = 1e-19
Identities = 227/337 (67%), Gaps = 3/337 (1%)
Strand=Plus/Plus
Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694
|||| | |||| ||| | |||||||| || |||| ||| ||| || || ||||||||
Sbjct 7166 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 7225
Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754
||||| || ||||| |||| ||||||||| | || |||||| | |||||||| || ||
Sbjct 7226 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 7285
Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCA 11811
|| || || || || || | | || ||| || || || | ||| | |||||
Sbjct 7286 TTCTACGGCCGCGAAAGCGATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCA 7345
Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871
| ||||| || ||||| || || ||| || || || ||||| || ||
Sbjct 7346 GTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAA 7405
Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931
|| || ||| || | || | || |||| ||| || | || ||||| || ||
Sbjct 7406 ATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGA 7465
Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968
|| ||||| || || || ||||| |||||||| |||
Sbjct 7466 ATAGATATTCTCAATCGCAATTTGGAATCCATAAAAA 7502
>seq13458
Length=7495
Score = 98.7 bits (108), Expect = 9e-16
Identities = 231/348 (66%), Gaps = 3/348 (1%)
Strand=Plus/Minus
Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694
|||| | |||| ||| | |||||||| || |||| ||| ||| || || ||||||||
Sbjct 2927 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 2868
Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754
||||| || ||||| |||| ||||||||| | || |||||| | |||||||| || ||
Sbjct 2867 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 2808
Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCA 11811
|| || || || | || | | || || || || || | ||| | |||||
Sbjct 2807 TTCTACGGCCGCGTAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCA 2748
Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871
| ||||| || ||| | || || ||| || || || ||||| || ||
Sbjct 2747 GTCAAGAGCCCACAACGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAA 2688
Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931
|| || ||| || | || | || |||| ||| || | || ||||| || ||
Sbjct 2687 ATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGA 2628
Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979
|| ||||| || || || ||||| |||||||| ||| | || || ||
Sbjct 2627 ATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 2580
>seq12995
Length=433444
Score = 98.7 bits (108), Expect = 9e-16
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||||||||| | || |||||||| || || || || |||||||| || | ||||
Sbjct 321916 CTTCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTT 321857
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
| | |||||| || | |||||||| || || ||||| ||||| || || ||||||||||
Sbjct 321856 TCAACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATG 321797
Query 11772 CTACTACTCTTTCTCCA 11788
| |||| ||| || |||
Sbjct 321796 CGACTAATCTATCGCCA 321780
>seq13244
Length=114396
Score = 89.7 bits (98), Expect = 5e-13
Identities = 229/347 (66%), Gaps = 9/347 (3%)
Strand=Plus/Plus
Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701
|||| ||| | |||||||| || |||| ||| ||| || || |||||||||||||
Sbjct 3485 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 3544
Query 11702 CCTCGtttttttATCCAAAATAT-----AGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756
|| ||||| |||| ||||||||| | || |||||||| |||||||| || || |
Sbjct 3545 CCGCGTTTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTT 3604
Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCATT 11813
| || || || || || | | || || || || || | ||| | ||||| |
Sbjct 3605 CTACGGCCGCGAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGT 3664
Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT-TTCTATAGCGTTAAATAAA 11872
||||| || ||||| || || ||| || || || | |||||| |||
Sbjct 3665 CAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAA 3724
Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932
| || ||| || | || | || |||| ||| || | || ||||| || |||
Sbjct 3725 TAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAA 3784
Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979
| ||||| || || || ||||| |||||||| ||| | || || ||
Sbjct 3785 TAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 3831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468438480162160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |