Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13338 122 8e-23 seq477 111 1e-19 seq13458 98.7 9e-16 seq12995 98.7 9e-16 seq13244 89.7 5e-13 >seq13338 Length=646138 Score = 122 bits (134), Expect = 8e-23 Identities = 232/341 (68%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 |||| ||| | |||||||| || |||| ||| ||| || || ||||||||||||| Sbjct 454011 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 454070 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || ||||| |||| ||||||||| | || |||||||| |||||||| || || || || Sbjct 454071 CCGCGTTTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACG 454130 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTG 11818 || ||||| || | | || || || | || | ||| | ||||| | Sbjct 454131 GCCGCAAAAGCGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGA 454190 Query 11819 GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT 11878 ||||| || ||||| || ||| ||| || || || ||||| || |||| || Sbjct 454191 GCCCACAACGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTT 454250 Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 ||| || | ||| | || |||| ||| || | || ||||| || ||||| ||| Sbjct 454251 CTTTTCATCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATA 454310 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 || || || || ||||| |||||||| ||| | || || || Sbjct 454311 TTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 454351 >seq477 Length=28440 Score = 111 bits (122), Expect = 1e-19 Identities = 227/337 (67%), Gaps = 3/337 (1%) Strand=Plus/Plus Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||| | |||| ||| | |||||||| || |||| ||| ||| || || |||||||| Sbjct 7166 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 7225 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||||| || ||||| |||| ||||||||| | || |||||| | |||||||| || || Sbjct 7226 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 7285 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCA 11811 || || || || || || | | || ||| || || || | ||| | ||||| Sbjct 7286 TTCTACGGCCGCGAAAGCGATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCA 7345 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 | ||||| || ||||| || || ||| || || || ||||| || || Sbjct 7346 GTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAA 7405 Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 || || ||| || | || | || |||| ||| || | || ||||| || || Sbjct 7406 ATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGA 7465 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 || ||||| || || || ||||| |||||||| ||| Sbjct 7466 ATAGATATTCTCAATCGCAATTTGGAATCCATAAAAA 7502 >seq13458 Length=7495 Score = 98.7 bits (108), Expect = 9e-16 Identities = 231/348 (66%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||| | |||| ||| | |||||||| || |||| ||| ||| || || |||||||| Sbjct 2927 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 2868 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||||| || ||||| |||| ||||||||| | || |||||| | |||||||| || || Sbjct 2867 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 2808 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCA 11811 || || || || | || | | || || || || || | ||| | ||||| Sbjct 2807 TTCTACGGCCGCGTAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCA 2748 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 | ||||| || ||| | || || ||| || || || ||||| || || Sbjct 2747 GTCAAGAGCCCACAACGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAA 2688 Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 || || ||| || | || | || |||| ||| || | || ||||| || || Sbjct 2687 ATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGA 2628 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 || ||||| || || || ||||| |||||||| ||| | || || || Sbjct 2627 ATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 2580 >seq12995 Length=433444 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||||||||| | || |||||||| || || || || |||||||| || | |||| Sbjct 321916 CTTCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTT 321857 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||| || | |||||||| || || ||||| ||||| || || |||||||||| Sbjct 321856 TCAACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATG 321797 Query 11772 CTACTACTCTTTCTCCA 11788 | |||| ||| || ||| Sbjct 321796 CGACTAATCTATCGCCA 321780 >seq13244 Length=114396 Score = 89.7 bits (98), Expect = 5e-13 Identities = 229/347 (66%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 |||| ||| | |||||||| || |||| ||| ||| || || ||||||||||||| Sbjct 3485 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 3544 Query 11702 CCTCGtttttttATCCAAAATAT-----AGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 || ||||| |||| ||||||||| | || |||||||| |||||||| || || | Sbjct 3545 CCGCGTTTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTT 3604 Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCATT 11813 | || || || || || | | || || || || || | ||| | ||||| | Sbjct 3605 CTACGGCCGCGAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGT 3664 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT-TTCTATAGCGTTAAATAAA 11872 ||||| || ||||| || || ||| || || || | |||||| ||| Sbjct 3665 CAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAA 3724 Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 | || ||| || | || | || |||| ||| || | || ||||| || ||| Sbjct 3725 TAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAA 3784 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 | ||||| || || || ||||| |||||||| ||| | || || || Sbjct 3785 TAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468438480162160