Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 196 6e-45
seq13458 165 1e-35
seq477 165 1e-35
seq13244 154 2e-32
seq13827 132 6e-26
seq13941 131 2e-25
seq12995 91.5 2e-13
>seq13338
Length=646138
Score = 196 bits (216), Expect = 6e-45
Identities = 264/364 (73%), Gaps = 9/364 (2%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| || ||||||||||| ||||| | ||||||||| || || || || |
Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| ||||| ||||| || |||||||| || |||||||| |||||||| |
Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140
Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 36354
| || | || ||| || | || | | || ||| ||||| | |||||||
Sbjct 454141 CGATGATTCGCTCGCC--GAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 454198
Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 36413
|||||||| ||||| ||||| ||||| || || || || | ||||||| ||||||
Sbjct 454199 CGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCA- 454257
Query 36414 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 36473
| | |||| | || |||| |||||||| || ||||| || ||||| || || ||||
Sbjct 454258 TCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317
Query 36474 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 36533
| || ||||| ||||| || ||| | | ||| || || || | || ||| || || |
Sbjct 454318 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 454377
Query 36534 GTTC 36537
||||
Sbjct 454378 GTTC 454381
Score = 86.0 bits (94), Expect = 8e-12
Identities = 115/157 (73%), Gaps = 6/157 (4%)
Strand=Plus/Plus
Query 35811 TTTAAAAATCAACATCTAGAGAAAAA---TGATTGTCTTCTTGA-GA--CATAACTCCCA 35864
||||||||||| | || |||| |||| || | |||| | | || |||||| ||
Sbjct 453516 TTTAAAAATCAGCTTCGAGAGTAAAAACGTGCTGGTCTCCCGTACGATTCATAACCCCGC 453575
Query 35865 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 35924
||| |||||| || || ||| ||||| ||||| || || || || || |||||||
Sbjct 453576 ATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTCCAAAGATATAT 453635
Query 35925 TTTCCATGAAATCGAATGGATTGATAACATTATAAAT 35961
| ||||| ||||| |||||||| ||||||||||||
Sbjct 453636 TCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672
>seq13458
Length=7495
Score = 165 bits (182), Expect = 1e-35
Identities = 257/364 (71%), Gaps = 9/364 (2%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| || ||||||||||| ||||| | ||||||||| || || || || |
Sbjct 2910 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 2851
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| ||||| ||||| | |||||||| || |||||||| ||||| | |
Sbjct 2850 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAG 2791
Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 36354
| || | || ||| || | | | | || ||| ||||| | |||||||
Sbjct 2790 CGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 2733
Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 36413
|||||| | ||||||||||| ||||| || || || || | ||| ||| ||||||
Sbjct 2732 CGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 2674
Query 36414 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 36473
| | || | | || |||| |||||||| || ||||| || |||| || || ||||
Sbjct 2673 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614
Query 36474 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 36533
| || ||||| ||||| || ||| | | ||| || || || | || ||| || || |
Sbjct 2613 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 2554
Query 36534 GTTC 36537
||||
Sbjct 2553 GTTC 2550
Score = 165 bits (182), Expect = 1e-35
Identities = 248/349 (71%), Gaps = 9/349 (3%)
Strand=Plus/Minus
Query 36195 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 36254
|||||||||| ||||| | ||||||||| || || || || || ||||||||||| |
Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447
Query 36255 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 36314
|||| ||||| | |||||||| || |||||||| ||||| || || || | || ||| |
Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387
Query 36315 CATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 36369
| || | | | || ||| ||||| | ||||||| |||||||| ||
Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329
Query 36370 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCATTACTATCTTTAACAT 36428
||||||||| ||||| || || || || | ||| ||| |||||| | | || | | |
Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCA-TCGTGTCCTGGATGT 6270
Query 36429 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 36488
| |||| ||||||||||| ||||| || |||| || || ||||| || ||||| ||||
Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210
Query 36489 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
| || ||| | | ||| || || || | || ||| || || |||||
Sbjct 6209 CATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGTTC 6161
>seq477
Length=28440
Score = 165 bits (182), Expect = 1e-35
Identities = 258/364 (71%), Gaps = 10/364 (3%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| || ||||||||||| ||||| | ||||||||| || || || || |
Sbjct 7183 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 7242
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| ||||| ||||| | |||||||| || |||||||| ||||| || |
Sbjct 7243 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAG 7302
Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 36354
| || | || || || | | | | || ||| ||||| | |||||||
Sbjct 7303 CGATGATTCGTTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 7360
Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 36413
|||||||| ||||||||||| ||||| || || || || | ||| ||| ||||||
Sbjct 7361 CGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 7419
Query 36414 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 36473
| | || | | || |||| |||||||| || ||||| || |||| || || ||||
Sbjct 7420 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479
Query 36474 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 36533
| || ||||| ||||| || ||| | | ||| || || || | || ||| || || |
Sbjct 7480 TCGCAATTTGGAATCCATA-AAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 7538
Query 36534 GTTC 36537
||||
Sbjct 7539 GTTC 7542
>seq13244
Length=114396
Score = 154 bits (170), Expect = 2e-32
Identities = 259/370 (70%), Gaps = 15/370 (4%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| || ||||||||||| ||||| | ||||||||| || || || || |
Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554
Query 36240 TAAGCCAAAATAT-----GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 36294
| ||||||||||| ||||| ||||| || |||||||| || |||||||| |||||
Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614
Query 36295 AAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCC 36349
|| || || | || ||| || | | | | || ||| ||||| | |||||
Sbjct 3615 GAAAGCGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCC 3672
Query 36350 CAATCGGCCTTCTTTTTTACACAAGGCATTGTC-TCTATAGCATTAAAGAGATAGttt-t 36407
|| |||||||| ||||||||||| ||| | || | ||||| | ||| ||| |
Sbjct 3673 CACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCT 3732
Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467
||||| | | || | | || |||| |||||||| || ||||| || |||| || |
Sbjct 3733 TTTCA-TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791
Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527
| ||||| || ||||| ||||| || ||| | | ||| || | || | || ||| ||
Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTTGAC 3851
Query 36528 AAAATCGTTC 36537
||| |||||
Sbjct 3852 TAAACCGTTC 3861
>seq13827
Length=723868
Score = 132 bits (146), Expect = 6e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 65411 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 65470
|||||| | || || ||||| || || || || || || | ||| || ||||| || ||
Sbjct 455326 CGATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAA 455267
Query 65471 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 65530
|| |||||||| ||||||||||| || ||||| |||| |||||| ||||| || ||
Sbjct 455266 CGCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTC 455207
Query 65531 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590
|| ||| | | | | || ||||||||| || |||||||| || ||||| ||||||||
Sbjct 455206 GAACGGAAACCTCATTAAAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGG 455147
Query 65591 TCTATGTCTCTTATTAGAGATTTCAG 65616
| |||| ||||| || | |||||
Sbjct 455146 ACGGTGTCGTTTATTCGATACTTCAG 455121
Score = 102 bits (112), Expect = 1e-16
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040
|||||| || ||||||||| | ||||||| ||| | || | ||||||||||||||
Sbjct 454555 TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTGAGGACACATCAACGA 454496
Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100
||| ||| || | ||| |||||||| || ||||| ||||||||||| || |||
Sbjct 454495 CCATATTCCATCGCTTTCCACGCGTTTCATGAAAAGATCCGGAATCCAAAGCGCGTAAAA 454436
Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154
|| || || | || | | || || || || || |||||||| | |||||| ||
Sbjct 454435 CAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTTCAAATCGAGAAA 454382
>seq13941
Length=98454
Score = 131 bits (144), Expect = 2e-25
Identities = 242/349 (69%), Gaps = 12/349 (3%)
Strand=Plus/Minus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || ||||| ||| ||||| | ||| ||||| || || || |||||
Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTTTC 98321
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301
| |||||| || ||||| || || || || || ||||| ||||| || ||||| || ||
Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261
Query 36302 ATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGG 36356
| || || ||| || | || | | ||| ||| ||||| | | ||||| |
Sbjct 98260 ACAACTCGCTCGCCGAA--CGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACG 98203
Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt-ttCATTA 36415
||||||| || || || || ||||| || |||||||| | || | | |||||
Sbjct 98202 CCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT-- 98145
Query 36416 CTA-TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 36474
| | || | || || |||| ||||||||||| ||||||||||| || | ||| || ||
Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085
Query 36475 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
|| || |||||||| ||| ||| || ||||| || || || |||
Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCT 98036
>seq12995
Length=433444
Score = 91.5 bits (100), Expect = 2e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 36481 TTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGC 36540
|||||| || || ||||| || || || | || |||||||| || |||| ||| |
Sbjct 321057 TTGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCAC 320998
Query 36541 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600
|||||||||||| || ||||| ||||| || |||||||| ||||| | || |||||||
Sbjct 320997 TAAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAA 320938
Query 36601 ATATTTTTCG 36610
|||||||
Sbjct 320937 CATTTTTTCG 320928
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|||||||| | ||| | ||| ||| ||||| | || ||||| | || | ||||||
Sbjct 321914 TCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTTTC 321855
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301
| |||||| ||| ||||||||||| || |||||||||||||| || || ||||| ||
Sbjct 321854 AACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATGCG 321795
Query 36302 ATAAGTCTCTCTCCATAA 36319
| | ||| || ||| ||
Sbjct 321794 ACTAATCTATCGCCAAAA 321777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658051539888760
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