Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13338 196 6e-45 seq13458 165 1e-35 seq477 165 1e-35 seq13244 154 2e-32 seq13827 132 6e-26 seq13941 131 2e-25 seq12995 91.5 2e-13 >seq13338 Length=646138 Score = 196 bits (216), Expect = 6e-45 Identities = 264/364 (73%), Gaps = 9/364 (2%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| ||||| ||||| || |||||||| || |||||||| |||||||| | Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 36354 | || | || ||| || | || | | || ||| ||||| | ||||||| Sbjct 454141 CGATGATTCGCTCGCC--GAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 454198 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 36413 |||||||| ||||| ||||| ||||| || || || || | ||||||| |||||| Sbjct 454199 CGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCA- 454257 Query 36414 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 36473 | | |||| | || |||| |||||||| || ||||| || ||||| || || |||| Sbjct 454258 TCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317 Query 36474 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 36533 | || ||||| ||||| || ||| | | ||| || || || | || ||| || || | Sbjct 454318 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 454377 Query 36534 GTTC 36537 |||| Sbjct 454378 GTTC 454381 Score = 86.0 bits (94), Expect = 8e-12 Identities = 115/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAA---TGATTGTCTTCTTGA-GA--CATAACTCCCA 35864 ||||||||||| | || |||| |||| || | |||| | | || |||||| || Sbjct 453516 TTTAAAAATCAGCTTCGAGAGTAAAAACGTGCTGGTCTCCCGTACGATTCATAACCCCGC 453575 Query 35865 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 35924 ||| |||||| || || ||| ||||| ||||| || || || || || ||||||| Sbjct 453576 ATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTCCAAAGATATAT 453635 Query 35925 TTTCCATGAAATCGAATGGATTGATAACATTATAAAT 35961 | ||||| ||||| |||||||| |||||||||||| Sbjct 453636 TCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672 >seq13458 Length=7495 Score = 165 bits (182), Expect = 1e-35 Identities = 257/364 (71%), Gaps = 9/364 (2%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 2910 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 2851 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| ||||| ||||| | |||||||| || |||||||| ||||| | | Sbjct 2850 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAG 2791 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 36354 | || | || ||| || | | | | || ||| ||||| | ||||||| Sbjct 2790 CGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 2733 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 36413 |||||| | ||||||||||| ||||| || || || || | ||| ||| |||||| Sbjct 2732 CGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 2674 Query 36414 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 36473 | | || | | || |||| |||||||| || ||||| || |||| || || |||| Sbjct 2673 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614 Query 36474 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 36533 | || ||||| ||||| || ||| | | ||| || || || | || ||| || || | Sbjct 2613 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 2554 Query 36534 GTTC 36537 |||| Sbjct 2553 GTTC 2550 Score = 165 bits (182), Expect = 1e-35 Identities = 248/349 (71%), Gaps = 9/349 (3%) Strand=Plus/Minus Query 36195 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 36254 |||||||||| ||||| | ||||||||| || || || || || ||||||||||| | Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447 Query 36255 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 36314 |||| ||||| | |||||||| || |||||||| ||||| || || || | || ||| | Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387 Query 36315 CATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 36369 | || | | | || ||| ||||| | ||||||| |||||||| || Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329 Query 36370 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCATTACTATCTTTAACAT 36428 ||||||||| ||||| || || || || | ||| ||| |||||| | | || | | | Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCA-TCGTGTCCTGGATGT 6270 Query 36429 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 36488 | |||| ||||||||||| ||||| || |||| || || ||||| || ||||| |||| Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210 Query 36489 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 | || ||| | | ||| || || || | || ||| || || ||||| Sbjct 6209 CATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGTTC 6161 >seq477 Length=28440 Score = 165 bits (182), Expect = 1e-35 Identities = 258/364 (71%), Gaps = 10/364 (3%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 7183 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 7242 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| ||||| ||||| | |||||||| || |||||||| ||||| || | Sbjct 7243 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAG 7302 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 36354 | || | || || || | | | | || ||| ||||| | ||||||| Sbjct 7303 CGATGATTCGTTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 7360 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 36413 |||||||| ||||||||||| ||||| || || || || | ||| ||| |||||| Sbjct 7361 CGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 7419 Query 36414 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 36473 | | || | | || |||| |||||||| || ||||| || |||| || || |||| Sbjct 7420 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479 Query 36474 TGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 36533 | || ||||| ||||| || ||| | | ||| || || || | || ||| || || | Sbjct 7480 TCGCAATTTGGAATCCATA-AAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 7538 Query 36534 GTTC 36537 |||| Sbjct 7539 GTTC 7542 >seq13244 Length=114396 Score = 154 bits (170), Expect = 2e-32 Identities = 259/370 (70%), Gaps = 15/370 (4%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554 Query 36240 TAAGCCAAAATAT-----GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 36294 | ||||||||||| ||||| ||||| || |||||||| || |||||||| ||||| Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614 Query 36295 AAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCC 36349 || || || | || ||| || | | | | || ||| ||||| | ||||| Sbjct 3615 GAAAGCGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCC 3672 Query 36350 CAATCGGCCTTCTTTTTTACACAAGGCATTGTC-TCTATAGCATTAAAGAGATAGttt-t 36407 || |||||||| ||||||||||| ||| | || | ||||| | ||| ||| | Sbjct 3673 CACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCT 3732 Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 ||||| | | || | | || |||| |||||||| || ||||| || |||| || | Sbjct 3733 TTTCA-TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 | ||||| || ||||| ||||| || ||| | | ||| || | || | || ||| || Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTTGAC 3851 Query 36528 AAAATCGTTC 36537 ||| ||||| Sbjct 3852 TAAACCGTTC 3861 >seq13827 Length=723868 Score = 132 bits (146), Expect = 6e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 65411 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 65470 |||||| | || || ||||| || || || || || || | ||| || ||||| || || Sbjct 455326 CGATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAA 455267 Query 65471 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 65530 || |||||||| ||||||||||| || ||||| |||| |||||| ||||| || || Sbjct 455266 CGCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTC 455207 Query 65531 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590 || ||| | | | | || ||||||||| || |||||||| || ||||| |||||||| Sbjct 455206 GAACGGAAACCTCATTAAAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGG 455147 Query 65591 TCTATGTCTCTTATTAGAGATTTCAG 65616 | |||| ||||| || | ||||| Sbjct 455146 ACGGTGTCGTTTATTCGATACTTCAG 455121 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 |||||| || ||||||||| | ||||||| ||| | || | |||||||||||||| Sbjct 454555 TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTGAGGACACATCAACGA 454496 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| ||| || | ||| |||||||| || ||||| ||||||||||| || ||| Sbjct 454495 CCATATTCCATCGCTTTCCACGCGTTTCATGAAAAGATCCGGAATCCAAAGCGCGTAAAA 454436 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154 || || || | || | | || || || || || |||||||| | |||||| || Sbjct 454435 CAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTTCAAATCGAGAAA 454382 >seq13941 Length=98454 Score = 131 bits (144), Expect = 2e-25 Identities = 242/349 (69%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || ||||| ||| ||||| | ||| ||||| || || || ||||| Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTTTC 98321 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 | |||||| || ||||| || || || || || ||||| ||||| || ||||| || || Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261 Query 36302 ATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGG 36356 | || || ||| || | || | | ||| ||| ||||| | | ||||| | Sbjct 98260 ACAACTCGCTCGCCGAA--CGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACG 98203 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt-ttCATTA 36415 ||||||| || || || || ||||| || |||||||| | || | | ||||| Sbjct 98202 CCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT-- 98145 Query 36416 CTA-TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 36474 | | || | || || |||| ||||||||||| ||||||||||| || | ||| || || Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085 Query 36475 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || |||||||| ||| ||| || ||||| || || || ||| Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCT 98036 >seq12995 Length=433444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 36481 TTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGC 36540 |||||| || || ||||| || || || | || |||||||| || |||| ||| | Sbjct 321057 TTGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCAC 320998 Query 36541 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 |||||||||||| || ||||| ||||| || |||||||| ||||| | || ||||||| Sbjct 320997 TAAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAA 320938 Query 36601 ATATTTTTCG 36610 ||||||| Sbjct 320937 CATTTTTTCG 320928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 |||||||| | ||| | ||| ||| ||||| | || ||||| | || | |||||| Sbjct 321914 TCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTTTC 321855 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 | |||||| ||| ||||||||||| || |||||||||||||| || || ||||| || Sbjct 321854 AACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATGCG 321795 Query 36302 ATAAGTCTCTCTCCATAA 36319 | | ||| || ||| || Sbjct 321794 ACTAATCTATCGCCAAAA 321777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658051539888760