Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq7637 167 2e-36 seq13722 156 4e-33 >seq7637 Length=48035 Score = 167 bits (184), Expect = 2e-36 Identities = 284/410 (69%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989 |||||| || || |||||| || ||||| || || |||| | ||||||||| || | Sbjct 7348 ATCAACATGATTCAAGTAAACATGTGCGTCGCCTAAACTGTGAATAAAGTCTCCAGGCTT 7407 Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 || || |||||||| | | | | || ||||||| |||||| |||||||| || || Sbjct 7408 CAAATTAGTCACGTGAGCCAGGATACAAGTGAGGAGGGAGTAGCTAGCGATGTTGAAAGG 7467 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC--CCGA 21107 || ||||| ||||| || || || | ||||||||||||||| || | || || | || Sbjct 7468 CACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGCACGATAATTCGCCTTCGGA 7527 Query 21108 GCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCG 21167 | |||||||| ||| ||| |||||||||||| |||||||||| || | ||| | Sbjct 7528 G--ACGTAAAATTGAGCCAATACGTGACAAGGACGGAGAGCCATTTTCGATAAGTCTGAT 7585 Query 21168 GGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACC 21227 |||||||||| |||| | ||||| | ||| ||| | ||||| ||| | Sbjct 7586 GGGTTCCACGAAGACATGATGATGCCTCTGTCGAAGGGATTATTTCGAATTAAATCGATG 7645 Query 21228 ACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCC 21287 || | || || || | || || | ||| | ||| | || || | || | | Sbjct 7646 ACATGTTCCAATTGATCAAATCCTTGTTGCGTGTAATCGGCATTTGCGCCTTTATATTTC 7705 Query 21288 GCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 || || ||||| | ||| ||||| |||||||| || |||| |||||| || Sbjct 7706 GCTCCGAAATGCCGCCATTGGAAGCCGTACACGGGTCCCACATCGCCTTC 7755 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 21013 GATAC--GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 ||||| || || |||| |||| |||||||| || || || ||||| ||||| || || Sbjct 10894 GATACAGGTGAGAAGGGAATAGCCAGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGC 10835 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTC--CCCCCGAGCCACGTAAAACTGACACAAA 21128 || | ||||||||||||||| || | || | | ||| |||||||| ||| ||| Sbjct 10834 TGATCGCTGGTACAGCTGGCACGATAATTCGTCTTCGGAG--ACGTAAAATTGAGCCAAT 10777 Query 21129 ACGTGACAAGGAGGGAGAGCCAT 21151 |||||||||||| |||||||||| Sbjct 10776 ACGTGACAAGGACGGAGAGCCAT 10754 >seq13722 Length=82832 Score = 156 bits (172), Expect = 4e-33 Identities = 170/224 (76%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989 |||||| || || |||||| || ||||| || || ||||| | ||||||||| || | Sbjct 64109 ATCAACATGATTCAAGTAAACATGCGCGTCGCCTAAAGTGTGAATAAAGTCTCCAGGCTT 64050 Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 || || |||||||| | | | | || ||||||| |||||| |||||||| || || Sbjct 64049 CAAATTAGTCACGTGAGCCAGGATACAGGTGAGGAGGGAGTAGCTAGCGATGTTGAAAGG 63990 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC--CCGA 21107 || ||||| ||||| || || || | ||||||||||||||| || | || || | || Sbjct 63989 CACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGCACGATAATTCGCCATCGGA 63930 Query 21108 GCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 | |||||||| ||| ||| ||||||||||||||||||||||| Sbjct 63929 G--ACGTAAAATTGAGCCAATACGTGACAAGGAGGGAGAGCCAT 63888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427699157928720