Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq7637 167 2e-36
seq13722 156 4e-33
>seq7637
Length=48035
Score = 167 bits (184), Expect = 2e-36
Identities = 284/410 (69%), Gaps = 4/410 (1%)
Strand=Plus/Plus
Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989
|||||| || || |||||| || ||||| || || |||| | ||||||||| || |
Sbjct 7348 ATCAACATGATTCAAGTAAACATGTGCGTCGCCTAAACTGTGAATAAAGTCTCCAGGCTT 7407
Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049
|| || |||||||| | | | | || ||||||| |||||| |||||||| || ||
Sbjct 7408 CAAATTAGTCACGTGAGCCAGGATACAAGTGAGGAGGGAGTAGCTAGCGATGTTGAAAGG 7467
Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC--CCGA 21107
|| ||||| ||||| || || || | ||||||||||||||| || | || || | ||
Sbjct 7468 CACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGCACGATAATTCGCCTTCGGA 7527
Query 21108 GCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCG 21167
| |||||||| ||| ||| |||||||||||| |||||||||| || | ||| |
Sbjct 7528 G--ACGTAAAATTGAGCCAATACGTGACAAGGACGGAGAGCCATTTTCGATAAGTCTGAT 7585
Query 21168 GGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACC 21227
|||||||||| |||| | ||||| | ||| ||| | ||||| ||| |
Sbjct 7586 GGGTTCCACGAAGACATGATGATGCCTCTGTCGAAGGGATTATTTCGAATTAAATCGATG 7645
Query 21228 ACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCC 21287
|| | || || || | || || | ||| | ||| | || || | || | |
Sbjct 7646 ACATGTTCCAATTGATCAAATCCTTGTTGCGTGTAATCGGCATTTGCGCCTTTATATTTC 7705
Query 21288 GCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337
|| || ||||| | ||| ||||| |||||||| || |||| |||||| ||
Sbjct 7706 GCTCCGAAATGCCGCCATTGGAAGCCGTACACGGGTCCCACATCGCCTTC 7755
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/143 (76%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 21013 GATAC--GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070
||||| || || |||| |||| |||||||| || || || ||||| ||||| || ||
Sbjct 10894 GATACAGGTGAGAAGGGAATAGCCAGCGATGTTGAAAGGCACTCCGAGTCCCATATCAGC 10835
Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTC--CCCCCGAGCCACGTAAAACTGACACAAA 21128
|| | ||||||||||||||| || | || | | ||| |||||||| ||| |||
Sbjct 10834 TGATCGCTGGTACAGCTGGCACGATAATTCGTCTTCGGAG--ACGTAAAATTGAGCCAAT 10777
Query 21129 ACGTGACAAGGAGGGAGAGCCAT 21151
|||||||||||| ||||||||||
Sbjct 10776 ACGTGACAAGGACGGAGAGCCAT 10754
>seq13722
Length=82832
Score = 156 bits (172), Expect = 4e-33
Identities = 170/224 (76%), Gaps = 4/224 (2%)
Strand=Plus/Minus
Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989
|||||| || || |||||| || ||||| || || ||||| | ||||||||| || |
Sbjct 64109 ATCAACATGATTCAAGTAAACATGCGCGTCGCCTAAAGTGTGAATAAAGTCTCCAGGCTT 64050
Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049
|| || |||||||| | | | | || ||||||| |||||| |||||||| || ||
Sbjct 64049 CAAATTAGTCACGTGAGCCAGGATACAGGTGAGGAGGGAGTAGCTAGCGATGTTGAAAGG 63990
Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC--CCGA 21107
|| ||||| ||||| || || || | ||||||||||||||| || | || || | ||
Sbjct 63989 CACTCCGAGTCCCATATCAGCTGATCGCTGGTACAGCTGGCACGATAATTCGCCATCGGA 63930
Query 21108 GCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151
| |||||||| ||| ||| |||||||||||||||||||||||
Sbjct 63929 G--ACGTAAAATTGAGCCAATACGTGACAAGGAGGGAGAGCCAT 63888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427699157928720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |