Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 141 9e-29
seq13894 114 1e-20
>seq12471
Length=105862
Score = 141 bits (156), Expect = 9e-29
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|| ||||| || |||| ||| || ||||| |||||||| |||||||| | |||||
Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCA 72957
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|||||||| ||||| |||||| |||| ||||| || ||||| || || || |||||||||
Sbjct 72958 TCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTG 73017
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || ||| | | ||| | ||||| | ||||| || || | || |
Sbjct 73018 TCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATG 73077
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||||| |||| ||||| ||||| |||||||||
Sbjct 73078 GTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCATA 73113
Score = 125 bits (138), Expect = 7e-24
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611
|||||| ||||| | ||| ||||| ||||| ||||| |||||||||| ||||| ||
Sbjct 72155 CAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATC 72214
Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
||||| |||||||||||| |||||| || || || ||||| || || || ||||||||
Sbjct 72215 CTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTC 72274
Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731
||| || || | | ||| | ||||| | ||||| || || | || | ||
Sbjct 72275 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGT 72334
Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||| |||| ||||| || || || ||||||
Sbjct 72335 CTTGCCAGTCAGGGTTTTGACAAAGATCTGCATA 72368
Score = 107 bits (118), Expect = 2e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||||| || | | || ||||||| ||| || ||||| || ||||| ||||||||
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||||| || | ||||| | ||||| ||||| | |||| ||| || ||||| |||||
Sbjct 73174 AGTGTGCGTCCA-TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 73232
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|| ||||||||||| ||| | || | ||||| | || | |||||| | ||||| |
Sbjct 73233 AATCCCTTCTTTGTC-TTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAA 73291
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
| || | || | || || || || | ||||| || || || ||||||
Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCATA 73341
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||||| || || ||||| |||||||| || ||||||| |||| |||||
Sbjct 73422 ACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCC 73481
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
| |||||||| || |||||| ||| || ||||| ||||| || ||||||||||| |
Sbjct 73482 AATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGG 73541
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || ||| | | || | || || | ||||| || || | ||| | || ||
Sbjct 73542 ATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTTT 73601
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || | ||||| ||||| || |||||
Sbjct 73602 CCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| || | ||| || || || | || || ||||| || ||||| || |||||
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| |||||||||||| || ||||| | |||| || || |||||||||||
Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| || || ||| | || | || | | || | |||||| | ||||||||
Sbjct 73752 ATTCCTTCCTTATC-CTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | || || || || | ||||| || || || |||||
Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
>seq13894
Length=1211295
Score = 114 bits (126), Expect = 1e-20
Identities = 163/228 (71%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTT-TGAATGTTATAATCGCT 139596
||||||| ||||||| || | |||| || || || ||| || ||||| |||||
Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| || | ||||| || |||||||| ||| |||||| ||| |||||||| |||||
Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||||||||| |||||| || | | ||| | ||| |||| || || ||
Sbjct 231838 AATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGAC 231897
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || | ||||| || || || ||||| ||||| || |||||
Sbjct 231898 TTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || |||||||| || || | || || || || || ||||| |||||| |
Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||||| | || || || ||| | || | |||||| || ||||| ||
Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||||||||| |||||| || | | || | ||||| | || || ||
Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACT 231669
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | ||| | ||||| ||||| || ||||| ||||| || ||||||
Sbjct 231670 TCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCATA 231717
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| ||||||| || | |||| || |||||||| || ||||| |||||| |
Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||||| | || || || || |||||| ||||||||||| || ||
Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| |||||||| |||||| || | | ||| | ||||| | || || ||
Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | || | || || || || || ||||| || || || ||||||
Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCATA 232174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495972606408800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |