Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12471 141 9e-29 seq13894 114 1e-20 >seq12471 Length=105862 Score = 141 bits (156), Expect = 9e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || ||||| || |||| ||| || ||||| |||||||| |||||||| | ||||| Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCA 72957 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||| ||||| |||||| |||| ||||| || ||||| || || || ||||||||| Sbjct 72958 TCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTG 73017 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | ||| | ||||| | ||||| || || | || | Sbjct 73018 TCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATG 73077 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| |||| ||||| ||||| ||||||||| Sbjct 73078 GTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCATA 73113 Score = 125 bits (138), Expect = 7e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | ||| ||||| ||||| ||||| |||||||||| ||||| || Sbjct 72155 CAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATC 72214 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||||| |||||||||||| |||||| || || || ||||| || || || |||||||| Sbjct 72215 CTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTC 72274 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | ||| | ||||| | ||||| || || | || | || Sbjct 72275 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTGATGGT 72334 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| |||| ||||| || || || |||||| Sbjct 72335 CTTGCCAGTCAGGGTTTTGACAAAGATCTGCATA 72368 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| || | | || ||||||| ||| || ||||| || ||||| |||||||| Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| | ||||| ||||| | |||| ||| || ||||| ||||| Sbjct 73174 AGTGTGCGTCCA-TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 73232 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | || | ||||| | || | |||||| | ||||| | Sbjct 73233 AATCCCTTCTTTGTC-TTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAA 73291 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || || | ||||| || || || |||||| Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCATA 73341 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || || ||||| |||||||| || ||||||| |||| ||||| Sbjct 73422 ACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCC 73481 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||| || |||||| ||| || ||||| ||||| || ||||||||||| | Sbjct 73482 AATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGG 73541 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | || || | ||||| || || | ||| | || || Sbjct 73542 ATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTTT 73601 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| || ||||| Sbjct 73602 CCAGTGAGTGTTTTGACGAAGATCTGCAT 73630 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| || | ||| || || || | || || ||||| || ||||| || ||||| Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||||||||| || ||||| | |||| || || ||||||||||| Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | || | | || | |||||| | |||||||| Sbjct 73752 ATTCCTTCCTTATC-CTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || || || | ||||| || || || ||||| Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858 >seq13894 Length=1211295 Score = 114 bits (126), Expect = 1e-20 Identities = 163/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTT-TGAATGTTATAATCGCT 139596 ||||||| ||||||| || | |||| || || || ||| || ||||| ||||| Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||||| || |||||||| ||| |||||| ||| |||||||| ||||| Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| || | | ||| | ||| |||| || || || Sbjct 231838 AATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGAC 231897 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || || ||||| ||||| || ||||| Sbjct 231898 TTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || |||||||| || || | || || || || || ||||| |||||| | Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | || || || ||| | || | |||||| || ||||| || Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| || | | || | ||||| | || || || Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACT 231669 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| ||||| || ||||| ||||| || |||||| Sbjct 231670 TCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCATA 231717 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||| || | |||| || |||||||| || ||||| |||||| | Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | || || || || |||||| ||||||||||| || || Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| |||||| || | | ||| | ||||| | || || || Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || || ||||| || || || |||||| Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCATA 232174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495972606408800