Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 122 8e-23
seq13244 95.1 1e-14
seq12995 89.7 5e-13
>seq13338
Length=646138
Score = 122 bits (134), Expect = 8e-23
Identities = 229/334 (69%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||| ||||| || || | |||||| || || ||||| ||||||| || ||||| |
Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
||| ||||||||||| || ||||| ||||||||||| || || || || || ||||| |
Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140
Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073
| || | ||| || || |||| || ||||||| ||||| | |||||| |
Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200
Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA-TTCCTTCTCTTTA 14132
|| || | | | ||| || || || || || || ||||| || ||| || |
Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATCG 454260
Query 14133 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192
|||| ||||| |||| || | | ||| ||||| || || || || || || ||
Sbjct 454261 TGTCTTG-GATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319
Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226
|| || || || |||||||| | | ||||||||
Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTCCG 454353
>seq13244
Length=114396
Score = 95.1 bits (104), Expect = 1e-14
Identities = 228/340 (67%), Gaps = 10/340 (3%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||| ||||| || || | |||||| || || ||||| ||||||| || ||||| |
Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554
Query 13954 ttAACCAAAATATTGCAGCAA-----ATGACCCGGAAAAGAATATTCCCTCAACTGCAGC 14008
||| ||||||||| | || | |||| ||||||||||| || || || || || ||
Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614
Query 14009 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14068
|| || || | ||| || || || | || ||||||| ||||| | ||||||
Sbjct 3615 GAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674
Query 14069 TTCAGAtttttttttAATAAAATCCATTGT-TTCAATAGCATTAAATAAAT-ATTCCTTC 14126
| || || | | || ||| || || ||| | ||||| |||| ||| |||
Sbjct 3675 CAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTT 3734
Query 14127 TC-TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTT 14185
|| | || || | ||||| |||| || | | ||| ||||| ||||| | || ||
Sbjct 3735 TCATCGTGTCCTGG--ATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATT 3792
Query 14186 TTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225
|| || || || || || |||||||| | | |||||||
Sbjct 3793 CTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCC 3832
>seq12995
Length=433444
Score = 89.7 bits (98), Expect = 5e-13
Identities = 86/108 (80%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 14199 TGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGC 14257
||||| |||||||| || || ||||| | |||||||||| || | || |||||| |
Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAA-TCTTTCCAC 320998
Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATAT 14305
|||||||||||||| || |||||||| || |||||||| ||||| ||
Sbjct 320997 TAAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAAT 320950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479639616112600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |