Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq13338 122 8e-23 seq13244 95.1 1e-14 seq12995 89.7 5e-13 >seq13338 Length=646138 Score = 122 bits (134), Expect = 8e-23 Identities = 229/334 (69%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| || || | |||||| || || ||||| ||||||| || ||||| | Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||||||||||| || ||||| ||||||||||| || || || || || ||||| | Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | || | ||| || || |||| || ||||||| ||||| | |||||| | Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA-TTCCTTCTCTTTA 14132 || || | | | ||| || || || || || || ||||| || ||| || | Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATCG 454260 Query 14133 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192 |||| ||||| |||| || | | ||| ||||| || || || || || || || Sbjct 454261 TGTCTTG-GATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319 Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 || || || || |||||||| | | |||||||| Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTCCG 454353 >seq13244 Length=114396 Score = 95.1 bits (104), Expect = 1e-14 Identities = 228/340 (67%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| || || | |||||| || || ||||| ||||||| || ||||| | Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554 Query 13954 ttAACCAAAATATTGCAGCAA-----ATGACCCGGAAAAGAATATTCCCTCAACTGCAGC 14008 ||| ||||||||| | || | |||| ||||||||||| || || || || || || Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614 Query 14009 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14068 || || || | ||| || || || | || ||||||| ||||| | |||||| Sbjct 3615 GAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674 Query 14069 TTCAGAtttttttttAATAAAATCCATTGT-TTCAATAGCATTAAATAAAT-ATTCCTTC 14126 | || || | | || ||| || || ||| | ||||| |||| ||| ||| Sbjct 3675 CAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTT 3734 Query 14127 TC-TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTT 14185 || | || || | ||||| |||| || | | ||| ||||| ||||| | || || Sbjct 3735 TCATCGTGTCCTGG--ATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATT 3792 Query 14186 TTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 || || || || || || |||||||| | | ||||||| Sbjct 3793 CTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCC 3832 >seq12995 Length=433444 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 14199 TGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGC 14257 ||||| |||||||| || || ||||| | |||||||||| || | || |||||| | Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAA-TCTTTCCAC 320998 Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATAT 14305 |||||||||||||| || |||||||| || |||||||| ||||| || Sbjct 320997 TAAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAAT 320950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479639616112600