Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq13338 141 9e-29 seq13244 93.3 4e-14 seq12995 93.3 4e-14 >seq13338 Length=646138 Score = 141 bits (156), Expect = 9e-29 Identities = 232/332 (70%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| || || | |||||| || || ||||| ||||||| || ||||| | Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| ||||||||||| |||||||| ||||||||||| || || || || || ||||| | Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | || | ||| || || |||| || |||||||| ||||| | |||||| | Sbjct 454141 CGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT-GTTCCTTCTCTTTA 13920 || || | | | ||| || ||||| || ||||| |||| ||| ||| || | Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATCG 454260 Query 13921 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980 |||| ||||| |||| || | | ||| ||||| || || || || || || || Sbjct 454261 TGTCTTG-GATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319 Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 || || || || ||||||||| | | |||||| Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTC 454351 >seq13244 Length=114396 Score = 93.3 bits (102), Expect = 4e-14 Identities = 227/339 (67%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| || || | |||||| || || ||||| ||||||| || ||||| | Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554 Query 13742 ttAACCAAAATATTGCAGCGA-----ATGATCCGGAAAAGAATATTCCCTCAACTGCAGC 13796 ||| ||||||||| | |||| |||| ||||||||||| || || || || || || Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614 Query 13797 AAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCA 13856 || || || | ||| || || || | || |||||||| ||||| | |||||| Sbjct 3615 GAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674 Query 13857 TTCAGAtttttttttAATAAAATCCATTGT-TTCGATTGCATTGAATAAAT-GTTCCTTC 13914 | || || | | || ||| || || || | || || |||| || ||| Sbjct 3675 CAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTT 3734 Query 13915 TC-TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTT 13973 || | || || | ||||| |||| || | | ||| ||||| ||||| | || || Sbjct 3735 TCATCGTGTCCTGG--ATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATT 3792 Query 13974 TTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 || || || || || || ||||||||| | | |||||| Sbjct 3793 CTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 3831 >seq12995 Length=433444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 13987 TGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAAATCTTTCTGC 14045 ||||| ||||||||||| || ||||||| |||||| ||| || | || |||||| | Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAA-TCTTTCCAC 320998 Query 14046 CAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATAT 14093 || |||||||||||||| |||||||| || |||||||| ||||| || Sbjct 320997 TAAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAAT 320950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478500625995960