Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 118 8e-22
seq12471 118 8e-22
>seq13894
Length=1211295
Score = 118 bits (130), Expect = 8e-22
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
||||| || | ||||| ||||| || || || | || |||||||| ||||| ||||||
Sbjct 232211 TCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAA 232270
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
|| ||||| || ||||| | || | ||||||||| || ||| | | || || |
Sbjct 232271 ATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTT 232330
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
||| || ||| || |||||| || | ||||| || || ||||||| |||||||||
Sbjct 232331 TCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACA 232390
Query 43099 AAAATTTGCATTTTC 43113
||||| |||||||||
Sbjct 232391 AAAATCTGCATTTTC 232405
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
|| |||||||| | ||| ||||| || | |||||||||||||| || || | ||
Sbjct 231505 AAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCT 231564
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
|||||||| || || |||||||| || || ||||| |||| || | |||||||| ||
Sbjct 231565 TCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCC 231624
Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077
||| | | ||||| | ||| ||||| | ||||| || | || || ||
Sbjct 231625 TGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTC 231684
Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||||||||| ||||||||| ||||| |||||
Sbjct 231685 TTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||| || || | |||||||||||||| || || | || |||||||| || || || ||
Sbjct 231982 CTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAA 232041
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037
|||||||| || ||||| | || | || ||||| || ||| | | || || |
Sbjct 232042 GATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTT 232101
Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
||| ||||| | ||||| || | || || |||||||| |||| ||||||||
Sbjct 232102 TTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCAC 232161
Query 43098 AAAAATTTGCAT 43109
|||||| |||||
Sbjct 232162 AAAAATCTGCAT 232173
>seq12471
Length=105862
Score = 118 bits (130), Expect = 8e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||| || || || || || ||||| |||| ||| ||||||||| | |||||||||
Sbjct 72140 GCCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCT 72199
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
|||||| || | || || | |||||| || ||||| |||||||||||||| |||| |||
Sbjct 72200 CAATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGG 72259
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| || ||||| || |||| | ||||| | ||| ||||| | | ||||||
Sbjct 72260 AATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGAC 72319
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || || || || || ||||| ||||| || |||||
Sbjct 72320 TTCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960
|||||||| | |||| |||||||| | ||||||||| ||||||||| | || |||
Sbjct 72615 ACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTCC 72674
Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020
|||||||| || || |||||||| ||||||||||| | || | || ||||| || |
Sbjct 72675 AATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGG 72734
Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080
||| ||||||| | | | ||||| | || || || |||| || || || ||
Sbjct 72735 ATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTG 72794
Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || | || || || || ||||||||
Sbjct 72795 CCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
Score = 107 bits (118), Expect = 1e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990
||||||||| | ||| ||| | || ||||||||||| || || |||||||| ||||||
Sbjct 73162 TTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGT 73221
Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050
||||| | || | |||||||| || ||| |||| || | | | ||||||
Sbjct 73222 TGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCG 73281
Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| | ||| || || | ||| ||||||||||| || || ||||| |||||||| |||||
Sbjct 73282 CTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| || | ||| || || || | ||||| ||| ||| || || | || ||
Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 73480
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
||||||||| ||||| || ||||| ||||||||||| | || | |||||||| ||
Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| |||| || | ||| || || | | |||||| || | || || |||||
Sbjct 73541 GATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTT 73600
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
||| || || ||||| || || || ||||||
Sbjct 73601 TCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| |||| || || |||||||| | || || || || | ||||| |||
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| || |||| || | || || || || |||||||||||||||||||||| ||
Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||||| || || ||| ||| | || || | | | ||||||| | ||| ||
Sbjct 73752 ATTCCTTCCTTATC-CTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || ||||||||||| || || ||||| |||||||| |||||
Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
|||||| || | ||| || || || | ||||| ||| || || || | || ||
Sbjct 72386 CACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTC 72445
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
||| ||||| ||||||||||||| ||||||||||||| || | ||||| || || |
Sbjct 72446 CAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATC-TT 72504
Query 43020 GA---TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076
|| | | || || | ||| | | ||||||| | ||| || || | || || ||
Sbjct 72505 GAATTTTAGCTTTTACATTCT--CGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGT 72562
Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||||| || |||||||| ||||| || |||||
Sbjct 72563 CTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956
||| |||||||| | || || || || | ||||||||| | ||| || | ||
Sbjct 72900 TAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATC 72959
Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016
|| | |||||| || ||||| || | ||||||||||| | || | |||||||| ||
Sbjct 72960 TTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTC 73019
Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076
|||| ||||||| | | | ||||| | || |||||| || | ||| || ||
Sbjct 73020 TTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGT 73079
Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || || || ||||| || || ||||||||
Sbjct 73080 CTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381301093982862
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