Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq13894 118 8e-22 seq12471 118 8e-22 >seq13894 Length=1211295 Score = 118 bits (130), Expect = 8e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| ||||| || || || | || |||||||| ||||| |||||| Sbjct 232211 TCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAA 232270 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || ||||| || ||||| | || | ||||||||| || ||| | | || || | Sbjct 232271 ATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTT 232330 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || ||| || |||||| || | ||||| || || ||||||| ||||||||| Sbjct 232331 TCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACA 232390 Query 43099 AAAATTTGCATTTTC 43113 ||||| ||||||||| Sbjct 232391 AAAATCTGCATTTTC 232405 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || |||||||| | ||| ||||| || | |||||||||||||| || || | || Sbjct 231505 AAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCT 231564 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||| || || |||||||| || || ||||| |||| || | |||||||| || Sbjct 231565 TCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCC 231624 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| | | ||||| | ||| ||||| | ||||| || | || || || Sbjct 231625 TGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTC 231684 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||||| ||||||||| ||||| ||||| Sbjct 231685 TTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | |||||||||||||| || || | || |||||||| || || || || Sbjct 231982 CTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAA 232041 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||| || ||||| | || | || ||||| || ||| | | || || | Sbjct 232042 GATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTT 232101 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | ||||| || | || || |||||||| |||| |||||||| Sbjct 232102 TTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCAC 232161 Query 43098 AAAAATTTGCAT 43109 |||||| ||||| Sbjct 232162 AAAAATCTGCAT 232173 >seq12471 Length=105862 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || || || ||||| |||| ||| ||||||||| | ||||||||| Sbjct 72140 GCCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCT 72199 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || | || || | |||||| || ||||| |||||||||||||| |||| ||| Sbjct 72200 CAATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGG 72259 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| | ||||| | ||| ||||| | | |||||| Sbjct 72260 AATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGAC 72319 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || ||||| ||||| || ||||| Sbjct 72320 TTCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | |||| |||||||| | ||||||||| ||||||||| | || ||| Sbjct 72615 ACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTCC 72674 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || |||||||| ||||||||||| | || | || ||||| || | Sbjct 72675 AATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGG 72734 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| ||||||| | | | ||||| | || || || |||| || || || || Sbjct 72735 ATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTG 72794 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || || || |||||||| Sbjct 72795 CCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 Score = 107 bits (118), Expect = 1e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||||||| | ||| ||| | || ||||||||||| || || |||||||| |||||| Sbjct 73162 TTGTAATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGT 73221 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | |||||||| || ||| |||| || | | | |||||| Sbjct 73222 TGATCCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCG 73281 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | | ||| || || | ||| ||||||||||| || || ||||| |||||||| ||||| Sbjct 73282 CTTGGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| || || || | ||||| ||| ||| || || | || || Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 73480 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||||||||| ||||| || ||||| ||||||||||| | || | |||||||| || Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| |||| || | ||| || || | | |||||| || | || || ||||| Sbjct 73541 GATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTT 73600 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||| || || ||||| || || || |||||| Sbjct 73601 TCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| |||| || || |||||||| | || || || || | ||||| ||| Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || |||| || | || || || || |||||||||||||||||||||| || Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||| | || || | | | ||||||| | ||| || Sbjct 73752 ATTCCTTCCTTATC-CTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || ||||| |||||||| ||||| Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| || || || | ||||| ||| || || || | || || Sbjct 72386 CACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCATCCTC 72445 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| ||||| ||||||||||||| ||||||||||||| || | ||||| || || | Sbjct 72446 CAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTATC-TT 72504 Query 43020 GA---TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || | | || || | ||| | | ||||||| | ||| || || | || || || Sbjct 72505 GAATTTTAGCTTTTACATTCT--CGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATGGT 72562 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || |||||||| ||||| || ||||| Sbjct 72563 CTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| |||||||| | || || || || | ||||||||| | ||| || | || Sbjct 72900 TAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATC 72959 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || | |||||| || ||||| || | ||||||||||| | || | |||||||| || Sbjct 72960 TTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTC 73019 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 |||| ||||||| | | | ||||| | || |||||| || | ||| || || Sbjct 73020 TTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGT 73079 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||| || || |||||||| Sbjct 73080 CTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381301093982862