Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13338 185 1e-41 seq13458 158 2e-33 seq477 158 2e-33 seq13244 147 3e-30 seq13827 145 1e-29 seq13941 131 2e-25 >seq13338 Length=646138 Score = 185 bits (204), Expect = 1e-41 Identities = 237/323 (73%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| ||||| ||||| || ||||||||||| |||||||| |||||||| | Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 42261 | || | || ||| || | || | | || ||| ||||| | ||||||| Sbjct 454141 CGATGATTCGCTCGCC--GAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 454198 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 42320 |||||||| ||||| |||||||| || || || || || | ||||||| |||||| Sbjct 454199 CGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCA- 454257 Query 42321 TACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAA 42380 | | |||| | || |||| |||||||| || ||||| || ||||| || || |||| Sbjct 454258 TCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317 Query 42381 TGGCCATCTGAAATCCGTAGAAA 42403 | || || || ||||| || ||| Sbjct 454318 TCGCAATTTGGAATCCATAAAAA 454340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 |||||| || ||| |||||| || || ||| ||||| ||||| ||||| || || Sbjct 453565 CATAACCCCGCATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTC 453624 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAT 41868 ||| |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct 453625 CAAAGATATATTCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672 >seq13458 Length=7495 Score = 158 bits (174), Expect = 2e-33 Identities = 222/308 (72%), Gaps = 9/308 (3%) Strand=Plus/Minus Query 42102 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG 42161 |||||||||| ||||| | ||||||||| || || || || || ||||||||||| | Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447 Query 42162 ACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 42221 |||| ||||| | ||||||||||| |||||||| ||||| || || || | || ||| | Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387 Query 42222 CATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 42276 | || | | | || ||| ||||| | ||||||| |||||||| || Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329 Query 42277 ACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCATTACTATCTTTAACAT 42335 |||||||||||| || || || || || | ||| ||| |||||| | | || | | | Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCA-TCGTGTCCTGGATGT 6270 Query 42336 ATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATC 42395 | |||| ||||||||||| ||||| || |||| || || ||||| || || || |||| Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210 Query 42396 CGTAGAAA 42403 | || ||| Sbjct 6209 CATAAAAA 6202 Score = 154 bits (170), Expect = 2e-32 Identities = 230/323 (71%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 2910 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 2851 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| ||||| ||||| | ||||||||||| |||||||| ||||| | | Sbjct 2850 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAG 2791 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 42261 | || | || ||| || | | | | || ||| ||||| | ||||||| Sbjct 2790 CGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 2733 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 42320 |||||| | |||||||||||||| || || || || || | ||| ||| |||||| Sbjct 2732 CGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 2674 Query 42321 TACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAA 42380 | | || | | || |||| |||||||| || ||||| || |||| || || |||| Sbjct 2673 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614 Query 42381 TGGCCATCTGAAATCCGTAGAAA 42403 | || || || ||||| || ||| Sbjct 2613 TCGCAATTTGGAATCCATAAAAA 2591 >seq477 Length=28440 Score = 158 bits (174), Expect = 2e-33 Identities = 231/323 (72%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 7183 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 7242 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| ||||| ||||| | ||||||||||| |||||||| ||||| || | Sbjct 7243 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAG 7302 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 42261 | || | || || || | | | | || ||| ||||| | ||||||| Sbjct 7303 CGATGATTCGTTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 7360 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 42320 |||||||| |||||||||||||| || || || || || | ||| ||| |||||| Sbjct 7361 CGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 7419 Query 42321 TACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAA 42380 | | || | | || |||| |||||||| || ||||| || |||| || || |||| Sbjct 7420 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479 Query 42381 TGGCCATCTGAAATCCGTAGAAA 42403 | || || || ||||| || ||| Sbjct 7480 TCGCAATTTGGAATCCATAAAAA 7502 >seq13244 Length=114396 Score = 147 bits (162), Expect = 3e-30 Identities = 233/329 (71%), Gaps = 15/329 (5%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554 Query 42147 TAAGCCAAAATAT-----AGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201 | ||||||||||| ||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614 Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCC 42256 || || || | || ||| || | | | | || ||| ||||| | ||||| Sbjct 3615 GAAAGCGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCC 3672 Query 42257 CAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAAAGAGATAGttt-t 42314 || |||||||| |||||||||||||| || || | ||||| | ||| ||| | Sbjct 3673 CACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCT 3732 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 ||||| | | || | | || |||| |||||||| || ||||| || |||| || | Sbjct 3733 TTTCA-TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAA 42403 | ||||| || || || ||||| || ||| Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAA 3820 >seq13827 Length=723868 Score = 145 bits (160), Expect = 1e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 ||||| | || || ||||| || || ||||||||||| | ||| || ||||| || || Sbjct 455325 GATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAAC 455266 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || || ||||| |||||||||||||| ||||| || | |||||| ||||| || || Sbjct 455265 GCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTCG 455206 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||| | | | | || ||||||||| || |||||||| || ||||| |||||||| Sbjct 455205 AACGGAAACCTCATTAAAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGGA 455146 Query 71554 CTGTGTCTCTTATTAGAAATTTCAG 71578 | ||||| ||||| || | ||||| Sbjct 455145 CGGTGTCGTTTATTCGATACTTCAG 455121 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||| || ||||||||| | | ||||| ||| | || | ||||||||||| || Sbjct 454555 TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTGAGGACACATCAACGA 454496 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| |||||| | || |||||||| || ||||| ||||||||||| || ||| Sbjct 454495 CCATATTCCATCGCTTTCCACGCGTTTCATGAAAAGATCCGGAATCCAAAGCGCGTAAAA 454436 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 | || || | || | |||| || || || || |||||||| | |||||| || | | Sbjct 454435 CAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTTCAAATCGAGAAATTCAAA 454376 Query 72123 AATATCAGAATGCCACGGTTC 72143 | ||| | |||||||| || Sbjct 454375 CACATCGGCGTGCCACGGCTC 454355 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 70862 CGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGT 70921 |||| |||| |||||||||||||||| || ||||| | || | || ||||| |||| Sbjct 456064 CGAGTTTCCACGCGTAAAAATGCATACTGGTCAGTTTTCCAAAGTTCGGCTCGGCAATGT 456005 Query 70922 GAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGA 70981 ||| || | ||| |||||||| ||||||||| || || || || | |||||| |||| Sbjct 456004 GAAGGTTGAGCGATTGACTTTGGCAGATGAAGGCGCCTCTATCAGCGGACATTTTGATGA 455945 Query 70982 TCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 | || || | |||||||| | ||||| || Sbjct 455944 CAATTTTCTGAGAGATTTCCCACACGGTTTTGTA 455911 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 |||||||| ||||| | |||||| || ||||| ||||||||||||| || ||||| ||| Sbjct 454816 ATAATTTCGGTGCACAAATTACTGCATTTGATCGTTCCTAAATTTTTCTGGTTACTTTTT 454757 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 || | ||| ||||| || | |||| ||||| ||||| | ||||||||| | | Sbjct 454756 CGATTGCTCGCGTCCTTGTACGTCAAGTACGGTGTACCTGTTTCCACCTGAGATTCGAGA 454697 Query 71869 ATCGC 71873 | ||| Sbjct 454696 ACCGC 454692 >seq13941 Length=98454 Score = 131 bits (144), Expect = 2e-25 Identities = 242/349 (69%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || ||||| ||| ||||| | ||| ||||| || || || ||||| Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTTTC 98321 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 | |||||| || ||||| || || || || || || || ||||| || ||||| || || Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261 Query 42209 ATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGG 42263 | || || ||| || | || | | ||| ||| ||||| | | ||||| | Sbjct 98260 ACAACTCGCTCGCCGAA--CGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACG 98203 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt-ttCATTA 42322 ||||||| || || || ||||| || || |||||||| | || | | ||||| Sbjct 98202 CCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT-- 98145 Query 42323 CTA-TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381 | | || | || || |||| |||||||||||| |||||||| || || | ||| || || Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085 Query 42382 GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| |||||||| ||| ||| || ||||| | || || ||| Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCT 98036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671015550991640