Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 185 1e-41
seq13458 158 2e-33
seq477 158 2e-33
seq13244 147 3e-30
seq13827 145 1e-29
seq13941 131 2e-25
>seq13338
Length=646138
Score = 185 bits (204), Expect = 1e-41
Identities = 237/323 (73%), Gaps = 9/323 (3%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || ||||||||||| ||||| | ||||||||| || || || || |
Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||| ||||| ||||| || ||||||||||| |||||||| |||||||| |
Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140
Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 42261
| || | || ||| || | || | | || ||| ||||| | |||||||
Sbjct 454141 CGATGATTCGCTCGCC--GAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 454198
Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 42320
|||||||| ||||| |||||||| || || || || || | ||||||| ||||||
Sbjct 454199 CGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCA- 454257
Query 42321 TACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAA 42380
| | |||| | || |||| |||||||| || ||||| || ||||| || || ||||
Sbjct 454258 TCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317
Query 42381 TGGCCATCTGAAATCCGTAGAAA 42403
| || || || ||||| || |||
Sbjct 454318 TCGCAATTTGGAATCCATAAAAA 454340
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820
|||||| || ||| |||||| || || ||| ||||| ||||| ||||| || ||
Sbjct 453565 CATAACCCCGCATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTC 453624
Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAT 41868
||| |||||||| ||||| |||||||| ||||| ||||||||||||
Sbjct 453625 CAAAGATATATTCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672
>seq13458
Length=7495
Score = 158 bits (174), Expect = 2e-33
Identities = 222/308 (72%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 42102 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG 42161
|||||||||| ||||| | ||||||||| || || || || || ||||||||||| |
Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447
Query 42162 ACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 42221
|||| ||||| | ||||||||||| |||||||| ||||| || || || | || ||| |
Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387
Query 42222 CATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 42276
| || | | | || ||| ||||| | ||||||| |||||||| ||
Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329
Query 42277 ACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCATTACTATCTTTAACAT 42335
|||||||||||| || || || || || | ||| ||| |||||| | | || | | |
Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCA-TCGTGTCCTGGATGT 6270
Query 42336 ATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATC 42395
| |||| ||||||||||| ||||| || |||| || || ||||| || || || ||||
Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210
Query 42396 CGTAGAAA 42403
| || |||
Sbjct 6209 CATAAAAA 6202
Score = 154 bits (170), Expect = 2e-32
Identities = 230/323 (71%), Gaps = 9/323 (3%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || ||||||||||| ||||| | ||||||||| || || || || |
Sbjct 2910 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 2851
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||| ||||| ||||| | ||||||||||| |||||||| ||||| | |
Sbjct 2850 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAG 2791
Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 42261
| || | || ||| || | | | | || ||| ||||| | |||||||
Sbjct 2790 CGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 2733
Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 42320
|||||| | |||||||||||||| || || || || || | ||| ||| ||||||
Sbjct 2732 CGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 2674
Query 42321 TACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAA 42380
| | || | | || |||| |||||||| || ||||| || |||| || || ||||
Sbjct 2673 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614
Query 42381 TGGCCATCTGAAATCCGTAGAAA 42403
| || || || ||||| || |||
Sbjct 2613 TCGCAATTTGGAATCCATAAAAA 2591
>seq477
Length=28440
Score = 158 bits (174), Expect = 2e-33
Identities = 231/323 (72%), Gaps = 9/323 (3%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || ||||||||||| ||||| | ||||||||| || || || || |
Sbjct 7183 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 7242
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||| ||||| ||||| | ||||||||||| |||||||| ||||| || |
Sbjct 7243 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAG 7302
Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATC 42261
| || | || || || | | | | || ||| ||||| | |||||||
Sbjct 7303 CGATGATTCGTTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 7360
Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 42320
|||||||| |||||||||||||| || || || || || | ||| ||| ||||||
Sbjct 7361 CGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 7419
Query 42321 TACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAA 42380
| | || | | || |||| |||||||| || ||||| || |||| || || ||||
Sbjct 7420 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479
Query 42381 TGGCCATCTGAAATCCGTAGAAA 42403
| || || || ||||| || |||
Sbjct 7480 TCGCAATTTGGAATCCATAAAAA 7502
>seq13244
Length=114396
Score = 147 bits (162), Expect = 3e-30
Identities = 233/329 (71%), Gaps = 15/329 (5%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || ||||||||||| ||||| | ||||||||| || || || || |
Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554
Query 42147 TAAGCCAAAATAT-----AGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201
| ||||||||||| ||||| ||||| || ||||||||||| |||||||| |||||
Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614
Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCC 42256
|| || || | || ||| || | | | | || ||| ||||| | |||||
Sbjct 3615 GAAAGCGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCC 3672
Query 42257 CAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAAAGAGATAGttt-t 42314
|| |||||||| |||||||||||||| || || | ||||| | ||| ||| |
Sbjct 3673 CACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCT 3732
Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374
||||| | | || | | || |||| |||||||| || ||||| || |||| || |
Sbjct 3733 TTTCA-TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791
Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAA 42403
| ||||| || || || ||||| || |||
Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAA 3820
>seq13827
Length=723868
Score = 145 bits (160), Expect = 1e-29
Identities = 155/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
||||| | || || ||||| || || ||||||||||| | ||| || ||||| || ||
Sbjct 455325 GATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAAC 455266
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
|| || ||||| |||||||||||||| ||||| || | |||||| ||||| || ||
Sbjct 455265 GCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTCG 455206
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
|| ||| | | | | || ||||||||| || |||||||| || ||||| ||||||||
Sbjct 455205 AACGGAAACCTCATTAAAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGGA 455146
Query 71554 CTGTGTCTCTTATTAGAAATTTCAG 71578
| ||||| ||||| || | |||||
Sbjct 455145 CGGTGTCGTTTATTCGATACTTCAG 455121
Score = 96.9 bits (106), Expect = 5e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002
|||||| || ||||||||| | | ||||| ||| | || | ||||||||||| ||
Sbjct 454555 TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTGAGGACACATCAACGA 454496
Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062
||| |||||| | || |||||||| || ||||| ||||||||||| || |||
Sbjct 454495 CCATATTCCATCGCTTTCCACGCGTTTCATGAAAAGATCCGGAATCCAAAGCGCGTAAAA 454436
Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122
| || || | || | |||| || || || || |||||||| | |||||| || | |
Sbjct 454435 CAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTTCAAATCGAGAAATTCAAA 454376
Query 72123 AATATCAGAATGCCACGGTTC 72143
| ||| | |||||||| ||
Sbjct 454375 CACATCGGCGTGCCACGGCTC 454355
Score = 93.3 bits (102), Expect = 6e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 70862 CGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGT 70921
|||| |||| |||||||||||||||| || ||||| | || | || ||||| ||||
Sbjct 456064 CGAGTTTCCACGCGTAAAAATGCATACTGGTCAGTTTTCCAAAGTTCGGCTCGGCAATGT 456005
Query 70922 GAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGA 70981
||| || | ||| |||||||| ||||||||| || || || || | |||||| ||||
Sbjct 456004 GAAGGTTGAGCGATTGACTTTGGCAGATGAAGGCGCCTCTATCAGCGGACATTTTGATGA 455945
Query 70982 TCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015
| || || | |||||||| | ||||| ||
Sbjct 455944 CAATTTTCTGAGAGATTTCCCACACGGTTTTGTA 455911
Score = 86.0 bits (94), Expect = 8e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808
|||||||| ||||| | |||||| || ||||| ||||||||||||| || ||||| |||
Sbjct 454816 ATAATTTCGGTGCACAAATTACTGCATTTGATCGTTCCTAAATTTTTCTGGTTACTTTTT 454757
Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868
|| | ||| ||||| || | |||| ||||| ||||| | ||||||||| | |
Sbjct 454756 CGATTGCTCGCGTCCTTGTACGTCAAGTACGGTGTACCTGTTTCCACCTGAGATTCGAGA 454697
Query 71869 ATCGC 71873
| |||
Sbjct 454696 ACCGC 454692
>seq13941
Length=98454
Score = 131 bits (144), Expect = 2e-25
Identities = 242/349 (69%), Gaps = 12/349 (3%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || ||||| ||| ||||| | ||| ||||| || || || |||||
Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTTTC 98321
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208
| |||||| || ||||| || || || || || || || ||||| || ||||| || ||
Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261
Query 42209 ATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGG 42263
| || || ||| || | || | | ||| ||| ||||| | | ||||| |
Sbjct 98260 ACAACTCGCTCGCCGAA--CGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACG 98203
Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt-ttCATTA 42322
||||||| || || || ||||| || || |||||||| | || | | |||||
Sbjct 98202 CCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT-- 98145
Query 42323 CTA-TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381
| | || | || || |||| |||||||||||| |||||||| || || | ||| || ||
Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085
Query 42382 GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
||||| |||||||| ||| ||| || ||||| | || || |||
Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCT 98036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671015550991640
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