Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq13941 122 1e-22
seq13338 120 5e-22
seq477 116 5e-21
seq13458 107 3e-18
seq12717 100 4e-16
seq13244 93.3 6e-14
>seq13941
Length=98454
Score = 122 bits (134), Expect = 1e-22
Identities = 213/307 (69%), Gaps = 5/307 (2%)
Strand=Plus/Plus
Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294
|||||||||||||| |||||||| |||||||||||||||||||||||| | ||||
Sbjct 98064 TTTTACGGATTCCAGATCATGATCGAGAACGTGCACTCGGAAATGTACAGTCTTTTGATC 98123
Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACAT--GCTCTTTAACGCAATCGACACGG 125352
| | |||||||| || | | | | | |||| | ||||| || ||||| |||
Sbjct 98124 AATACGTACATTCAGGA--CTCGATGAAGCGACATCATTTGTTTAATGCGATCGAGACGA 98181
Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412
| |||| | ||||| ||||| |||| | | ||||||| || | | | |
Sbjct 98182 TTCCGTGCGTGCGTAAGAAGGCGTTGTGGGCGCTCGATTGGATCGGGAACAAGACGGCGA 98241
Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472
||| || ||| || | || || ||||| || || || || || || || ||||| ||
Sbjct 98242 CGTTCGGCGAGCGAGTTGTAGCTTTCGCGGCGGTTGAAGGGATTTTTTTCTCGGGGTCTT 98301
Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532
| ||| | || |||||| | || || || || |||||||| ||| ||||| ||| || |
Sbjct 98302 TCGCGTCGATTTTTTGGATGAA-AAACGAGGTCTCATGCCTGGATTGACGTTCAGCAATG 98360
Query 125533 AGTTTAT 125539
| || ||
Sbjct 98361 AATTGAT 98367
>seq13338
Length=646138
Score = 120 bits (132), Expect = 5e-22
Identities = 255/376 (68%), Gaps = 10/376 (3%)
Strand=Plus/Minus
Query 125183 CAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTT-ACG 125241
|||| |||| ||| ||| ||||||| ||| || | || | |||| |||| | |
Sbjct 454391 CAATTAGTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGC-TCGTTTTTTTTATG 454333
Query 125242 GATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGT 125301
|||||||||| ||||||||| | || || || |||||| |||| | | |
Sbjct 454332 GATTCCAAATTGCGATTGAGAATATCCATTCCGAGATGTACAGCCTTTTGATAAATACTT 454273
Query 125302 ACATTCGCGATCCGCAACGTAAACACATGCTCTTT----AACGCAATCGACACGGTGCCG 125357
|||| | || || | | ||| | | || ||| ||||| ||||| ||| ||||
Sbjct 454272 ACATCCAAGACACG--ATGAAAAGAAA--CTATTTGTTCAACGCGATCGAGACGATGCCA 454217
Query 125358 TCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTAC 125417
| | | || || ||||| |||| || ||||||| || | | | | ||| |
Sbjct 454216 TGTGTGCGCAAGAAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACGTTC 454157
Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477
| ||| || | | || || || |||||||| |||||||||||||| ||| || |||
Sbjct 454156 GGCGAGCGAATCATCGCTTTTGCGGCCGTAGAAGGCATCTTCTTTTCCGGTTCATTCGCG 454097
Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537
| || |||||||| ||||| ||||| || ||||||||| ||||| ||||||||| ||
Sbjct 454096 TCAATATTTTGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTA 454037
Query 125538 ATATCTCGAGACGAGG 125553
|| |||||||||
Sbjct 454036 ATCAGCAGAGACGAGG 454021
>seq477
Length=28440
Score = 116 bits (128), Expect = 5e-21
Identities = 248/367 (68%), Gaps = 5/367 (1%)
Strand=Plus/Minus
Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCA 125248
|||| ||| ||| ||||||| ||| || | || | |||| ||||| ||||||||
Sbjct 7546 GTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGC-TCGTTTTTTTATGGATTCCA 7488
Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308
||| ||||||||| | | || || |||||| |||| | | ||||| |
Sbjct 7487 AATTGCGATTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATAAATACTTACATCCA 7428
Query 125309 CGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACACGGTGCCGTCTATACGT 125366
|| || | | ||| | || | | | ||||| ||||| ||| |||| | | | ||
Sbjct 7427 GGACACG--ATGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATGCCTTGTGTGCGC 7370
Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426
|| ||||| |||| || ||||||| || | | | | | | || ||| ||
Sbjct 7369 AAGAAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACATTCGGCGAACGA 7310
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
| | || ||||| |||||||| |||||||||||||| | | || ||| | || |||
Sbjct 7309 ATCATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTT 7250
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||||| ||||| ||||| || ||||||||| ||||| ||||||||| || || ||
Sbjct 7249 TGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAGA 7190
Query 125547 GACGAGG 125553
|||||||
Sbjct 7189 GACGAGG 7183
>seq13458
Length=7495
Score = 107 bits (118), Expect = 3e-18
Identities = 237/351 (68%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTT-ACGGATTCC 125247
|||| ||| ||| ||||||| ||| || | || | |||| |||| | |||||||
Sbjct 6157 GTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGC-TCGTTTTTTTTATGGATTCC 6215
Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307
|||| ||||||||| | | || || |||||| | |||| | | ||||| |
Sbjct 6216 AAATTGCGATTGAGAATATCTATTCTGAGATGTACAGTCTTTTGATAAATACTTACATCC 6275
Query 125308 GCGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACACGGTGCCGTCTATACG 125365
|| || | | ||| | || | | | ||||||||||| ||| |||| | | | ||
Sbjct 6276 AGGACACG--ATGAAAAGAAATTATTTGTTCAACGCAATCGAGACGATGCCTTGTGTGCG 6333
Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425
|| ||||| |||| || |||||| || | | | | | | | ||| |
Sbjct 6334 CAAGAAGGCGTTGTGGGCTCTTGACTGGATCAGAAACAAAACGGCGACATTTGGCGAGCG 6393
Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485
| | | || ||||| |||||||| |||||||||||||| | | || ||| | || ||
Sbjct 6394 AATCATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATT 6453
Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536
|||||| ||||| ||||| || ||||||||| ||||| ||||||||| ||
Sbjct 6454 TTGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATT 6504
Score = 102 bits (112), Expect = 1e-16
Identities = 246/368 (67%), Gaps = 6/368 (2%)
Strand=Plus/Plus
Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTT-ACGGATTCC 125247
|||| ||| ||| ||||||| ||| || | || | |||| |||| | |||||||
Sbjct 2546 GTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGC-TCGTTTTTTTTATGGATTCC 2604
Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307
|||| ||||||||| | | || || |||||| |||| | | ||||| |
Sbjct 2605 AAATTGCGATTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATAAATACTTACATCC 2664
Query 125308 GCGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACACGGTGCCGTCTATACG 125365
|| || | | ||| | || | | | ||||| ||||| ||| |||| | | | ||
Sbjct 2665 AGGACACG--ATGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATGCCTTGTGTGCG 2722
Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425
| ||||| |||| || ||||||| || | | | | | | || ||| |
Sbjct 2723 CACGAAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACATTCGGCGAGCG 2782
Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485
| | | || | ||| |||||||| |||||||||||||| | | || ||| | || ||
Sbjct 2783 AATCATCGCTTACGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATT 2842
Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545
|||||| ||||| ||||| || ||||||||| ||||| ||||||||| || || |
Sbjct 2843 TTGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAG 2902
Query 125546 AGACGAGG 125553
||||||||
Sbjct 2903 AGACGAGG 2910
>seq12717
Length=101427
Score = 100 bits (110), Expect = 4e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
||||| || || ||||| || |||| || || | || || ||||| ||||| |||||
Sbjct 53340 TTGCGATAGAAAATGACCCCAGCTCTTGGTCCGCGAAGTGTTTTGTGAGTTGTTGTGGTT 53399
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|| |||| ||||| ||| || |||| ||| | |||| |||||| || || | |
Sbjct 53400 ACTATGTGACAATGCTCGAATGGGCTAGGTGCCATTTTGGCCGCAACTAATCCGCTCACG 53459
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
||||| || |||||||| || |||| | |||| |||||||||||||||||| |
Sbjct 53460 TGTGCCATGTCGGCCATTAGGTTACAGCCATTTTCATCAGCAATCTCTCGGAATCGTTTG 53519
Query 127282 TAGTCCAAGCGCCGAGGATAGCA 127304
|| || | | | || || || ||
Sbjct 53520 TAATCAAGGTGTCGCGGGTAACA 53542
>seq13244
Length=114396
Score = 93.3 bits (102), Expect = 6e-14
Identities = 96/126 (76%), Gaps = 5/126 (4%)
Strand=Plus/Minus
Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-----TAGTTTTGCGGCCATCTTTT 125487
|| ||||| |||||||| |||||||||||||| || | | | ||| | || ||||
Sbjct 3620 GCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGGTTCATTCGCGTCGCGTCGATATTTT 3561
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
|||| ||||| ||||| || ||||||||| ||||| ||||||||| || || |||
Sbjct 3560 GGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAGAG 3501
Query 125548 ACGAGG 125553
||||||
Sbjct 3500 ACGAGG 3495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740922669105640
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