Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq13941 122 1e-22 seq13338 120 5e-22 seq477 116 5e-21 seq13458 107 3e-18 seq12717 100 4e-16 seq13244 93.3 6e-14 >seq13941 Length=98454 Score = 122 bits (134), Expect = 1e-22 Identities = 213/307 (69%), Gaps = 5/307 (2%) Strand=Plus/Plus Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 |||||||||||||| |||||||| |||||||||||||||||||||||| | |||| Sbjct 98064 TTTTACGGATTCCAGATCATGATCGAGAACGTGCACTCGGAAATGTACAGTCTTTTGATC 98123 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACAT--GCTCTTTAACGCAATCGACACGG 125352 | | |||||||| || | | | | | |||| | ||||| || ||||| ||| Sbjct 98124 AATACGTACATTCAGGA--CTCGATGAAGCGACATCATTTGTTTAATGCGATCGAGACGA 98181 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | |||| | ||||| ||||| |||| | | ||||||| || | | | | Sbjct 98182 TTCCGTGCGTGCGTAAGAAGGCGTTGTGGGCGCTCGATTGGATCGGGAACAAGACGGCGA 98241 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 ||| || ||| || | || || ||||| || || || || || || || ||||| || Sbjct 98242 CGTTCGGCGAGCGAGTTGTAGCTTTCGCGGCGGTTGAAGGGATTTTTTTCTCGGGGTCTT 98301 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 | ||| | || |||||| | || || || || |||||||| ||| ||||| ||| || | Sbjct 98302 TCGCGTCGATTTTTTGGATGAA-AAACGAGGTCTCATGCCTGGATTGACGTTCAGCAATG 98360 Query 125533 AGTTTAT 125539 | || || Sbjct 98361 AATTGAT 98367 >seq13338 Length=646138 Score = 120 bits (132), Expect = 5e-22 Identities = 255/376 (68%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 125183 CAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTT-ACG 125241 |||| |||| ||| ||| ||||||| ||| || | || | |||| |||| | | Sbjct 454391 CAATTAGTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGC-TCGTTTTTTTTATG 454333 Query 125242 GATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGT 125301 |||||||||| ||||||||| | || || || |||||| |||| | | | Sbjct 454332 GATTCCAAATTGCGATTGAGAATATCCATTCCGAGATGTACAGCCTTTTGATAAATACTT 454273 Query 125302 ACATTCGCGATCCGCAACGTAAACACATGCTCTTT----AACGCAATCGACACGGTGCCG 125357 |||| | || || | | ||| | | || ||| ||||| ||||| ||| |||| Sbjct 454272 ACATCCAAGACACG--ATGAAAAGAAA--CTATTTGTTCAACGCGATCGAGACGATGCCA 454217 Query 125358 TCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTAC 125417 | | | || || ||||| |||| || ||||||| || | | | | ||| | Sbjct 454216 TGTGTGCGCAAGAAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACGTTC 454157 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 | ||| || | | || || || |||||||| |||||||||||||| ||| || ||| Sbjct 454156 GGCGAGCGAATCATCGCTTTTGCGGCCGTAGAAGGCATCTTCTTTTCCGGTTCATTCGCG 454097 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || |||||||| ||||| ||||| || ||||||||| ||||| ||||||||| || Sbjct 454096 TCAATATTTTGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTA 454037 Query 125538 ATATCTCGAGACGAGG 125553 || ||||||||| Sbjct 454036 ATCAGCAGAGACGAGG 454021 >seq477 Length=28440 Score = 116 bits (128), Expect = 5e-21 Identities = 248/367 (68%), Gaps = 5/367 (1%) Strand=Plus/Minus Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCA 125248 |||| ||| ||| ||||||| ||| || | || | |||| ||||| |||||||| Sbjct 7546 GTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGC-TCGTTTTTTTATGGATTCCA 7488 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 ||| ||||||||| | | || || |||||| |||| | | ||||| | Sbjct 7487 AATTGCGATTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATAAATACTTACATCCA 7428 Query 125309 CGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACACGGTGCCGTCTATACGT 125366 || || | | ||| | || | | | ||||| ||||| ||| |||| | | | || Sbjct 7427 GGACACG--ATGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATGCCTTGTGTGCGC 7370 Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || ||||| |||| || ||||||| || | | | | | | || ||| || Sbjct 7369 AAGAAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACATTCGGCGAACGA 7310 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 | | || ||||| |||||||| |||||||||||||| | | || ||| | || ||| Sbjct 7309 ATCATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATTT 7250 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||| ||||| ||||| || ||||||||| ||||| ||||||||| || || || Sbjct 7249 TGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAGA 7190 Query 125547 GACGAGG 125553 ||||||| Sbjct 7189 GACGAGG 7183 >seq13458 Length=7495 Score = 107 bits (118), Expect = 3e-18 Identities = 237/351 (68%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTT-ACGGATTCC 125247 |||| ||| ||| ||||||| ||| || | || | |||| |||| | ||||||| Sbjct 6157 GTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGC-TCGTTTTTTTTATGGATTCC 6215 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307 |||| ||||||||| | | || || |||||| | |||| | | ||||| | Sbjct 6216 AAATTGCGATTGAGAATATCTATTCTGAGATGTACAGTCTTTTGATAAATACTTACATCC 6275 Query 125308 GCGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACACGGTGCCGTCTATACG 125365 || || | | ||| | || | | | ||||||||||| ||| |||| | | | || Sbjct 6276 AGGACACG--ATGAAAAGAAATTATTTGTTCAACGCAATCGAGACGATGCCTTGTGTGCG 6333 Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425 || ||||| |||| || |||||| || | | | | | | | ||| | Sbjct 6334 CAAGAAGGCGTTGTGGGCTCTTGACTGGATCAGAAACAAAACGGCGACATTTGGCGAGCG 6393 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485 | | | || ||||| |||||||| |||||||||||||| | | || ||| | || || Sbjct 6394 AATCATCGCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATT 6453 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 |||||| ||||| ||||| || ||||||||| ||||| ||||||||| || Sbjct 6454 TTGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATT 6504 Score = 102 bits (112), Expect = 1e-16 Identities = 246/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTT-ACGGATTCC 125247 |||| ||| ||| ||||||| ||| || | || | |||| |||| | ||||||| Sbjct 2546 GTTGGAACGGTTCAGTCAAGAGGTGAAAATCACGGAAGC-TCGTTTTTTTTATGGATTCC 2604 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307 |||| ||||||||| | | || || |||||| |||| | | ||||| | Sbjct 2605 AAATTGCGATTGAGAATATCTATTCTGAGATGTACAGCCTTTTGATAAATACTTACATCC 2664 Query 125308 GCGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACACGGTGCCGTCTATACG 125365 || || | | ||| | || | | | ||||| ||||| ||| |||| | | | || Sbjct 2665 AGGACACG--ATGAAAAGAAATTATTTGTTCAACGCGATCGAGACGATGCCTTGTGTGCG 2722 Query 125366 TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAG 125425 | ||||| |||| || ||||||| || | | | | | | || ||| | Sbjct 2723 CACGAAGGCGTTGTGGGCTCTTGACTGGATCGGAAACAAAACGGCGACATTCGGCGAGCG 2782 Query 125426 ACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTT 125485 | | | || | ||| |||||||| |||||||||||||| | | || ||| | || || Sbjct 2783 AATCATCGCTTACGCGGCCGTAGAAGGCATCTTCTTTTCCGCTTCATTCGCGTCGATATT 2842 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 |||||| ||||| ||||| || ||||||||| ||||| ||||||||| || || | Sbjct 2843 TTGGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAG 2902 Query 125546 AGACGAGG 125553 |||||||| Sbjct 2903 AGACGAGG 2910 >seq12717 Length=101427 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 ||||| || || ||||| || |||| || || | || || ||||| ||||| ||||| Sbjct 53340 TTGCGATAGAAAATGACCCCAGCTCTTGGTCCGCGAAGTGTTTTGTGAGTTGTTGTGGTT 53399 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || |||| ||||| ||| || |||| ||| | |||| |||||| || || | | Sbjct 53400 ACTATGTGACAATGCTCGAATGGGCTAGGTGCCATTTTGGCCGCAACTAATCCGCTCACG 53459 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 ||||| || |||||||| || |||| | |||| |||||||||||||||||| | Sbjct 53460 TGTGCCATGTCGGCCATTAGGTTACAGCCATTTTCATCAGCAATCTCTCGGAATCGTTTG 53519 Query 127282 TAGTCCAAGCGCCGAGGATAGCA 127304 || || | | | || || || || Sbjct 53520 TAATCAAGGTGTCGCGGGTAACA 53542 >seq13244 Length=114396 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/126 (76%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-----TAGTTTTGCGGCCATCTTTT 125487 || ||||| |||||||| |||||||||||||| || | | | ||| | || |||| Sbjct 3620 GCTTTCGCGGCCGTAGAAGGCATCTTCTTTTCCGGTTCATTCGCGTCGCGTCGATATTTT 3561 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||| ||||| ||||| || ||||||||| ||||| ||||||||| || || ||| Sbjct 3560 GGCTAAAGAAACGCGGTCTGATGCCCGGATTGACGTTCAGTAACGAATTAATCAGCAGAG 3501 Query 125548 ACGAGG 125553 |||||| Sbjct 3500 ACGAGG 3495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740922669105640