Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 145 6e-30
seq13894 136 3e-27
seq7061 96.9 3e-15
>seq12471
Length=105862
Score = 145 bits (160), Expect = 6e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||||||| || | || || ||||| || || ||||| || ||||||||||||||
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | ||||| |||||||| |||||| | |||||||| ||||| || |||
Sbjct 73174 AGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGA 73233
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||||||||| ||| ||| |||||| | || || || ||||| || ||
Sbjct 73234 ATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACT 73293
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||||| ||||| || || || ||||| |||||||| ||||||
Sbjct 73294 TCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCATA 73341
Score = 136 bits (150), Expect = 3e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||||||| || | || || ||||||||||| ||||| || |||||||| ||||||
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | || || || ||||| || || | |||| ||| ||||| ||| |||
Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488
Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||| || || |||||| ||| |||||| | || || || ||||| || ||
Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCT-TTTACATTCTCGATCGTGTCGCTTGGCTCAAC 72547
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | |||||||| || || || |||||||| ||||| || ||||||
Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCATA 72596
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||| | | ||| ||||| || ||||| || ||||| ||||||||||||||
Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | ||||| |||||||| |||||| | |||||||| ||||| || ||
Sbjct 72657 AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGG 72716
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || ||||| || || ||| || ||| |||| || || || ||| ||| ||
Sbjct 72717 ATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACC 72776
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| || ||||| || || |||| || || || || ||||||||
Sbjct 72777 TCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823
Score = 127 bits (140), Expect = 1e-24
Identities = 171/237 (72%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||| ||| || || || ||||| | ||| || ||||| || |||||||| |||||
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | || || |||||| | ||||| || ||||| ||| |||
Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || ||| ||| ||| || | || || || ||||| || ||
Sbjct 73752 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACC 73811
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTTGAAAA 15372
|| || ||||| ||||| || || || ||||| |||||||| ||||| ||| ||||
Sbjct 73812 TCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGATTCTAAAA 73868
Score = 125 bits (138), Expect = 5e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
|||||| | | || ||||| || || || ||||| || ||||| ||||||||||||||
Sbjct 72140 GCCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCT 72199
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
| | | | || || | |||||| ||||| | ||||| || ||||||||| ||
Sbjct 72200 CAATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGG 72259
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||| |||||||| || || ||| ||| |||| ||||| || || || ||
Sbjct 72260 AATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGAC 72319
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || ||||| || || ||||| ||||| ||||| || ||||||
Sbjct 72320 TTCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATA 72368
Score = 125 bits (138), Expect = 5e-24
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210
|||||| |||||||| || || ||||| || |||||||||||||| || | | | ||
Sbjct 72900 TAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATC 72959
Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270
||| | |||||| ||||| | || | ||| ||||| || ||| || |||||||||||
Sbjct 72960 TTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTC 73019
Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
|| ||| || ||| |||| || || || ||| || || || || || |||||
Sbjct 73020 TTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGT 73079
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| ||||| || || |||||||||
Sbjct 73080 CTTGCCAGTCAGGGTTTTGACGAAGATTTGCATA 73113
Score = 125 bits (138), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||| || || ||||| || |||||||| ||||| | | | | | |||||
Sbjct 73422 ACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCC 73481
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||||||| || ||| | |||||||| ||||| || ||||| |||||||||||
Sbjct 73482 AATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGG 73541
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| || ||| | || |||||||| || || || || ||||||||||||||
Sbjct 73542 ATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTTTT 73601
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| || || || |||||
Sbjct 73602 CCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
>seq13894
Length=1211295
Score = 136 bits (150), Expect = 3e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||||| ||||| ||||| || || || || || || ||||||||||||
Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| ||| | ||||| ||||| || || || | || ||||||||||||||| |||
Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315
|| ||||||||||| ||||| ||| ||| | || ||||| || | || ||| ||
Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTC-CGATGGTTCGAC 231668
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||||||||| || || || | |||||| || ||||| ||||||
Sbjct 231669 TTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCATA 231717
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||| | | || | ||||||||| || ||||| || ||||||||||||
Sbjct 231947 CCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGAC 232006
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | ||||| ||||| || || ||| | ||||| ||||| || || |||
Sbjct 232007 AAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGG 232066
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || |||||||| ||||| ||| || |||| ||||| || ||| ||
Sbjct 232067 ATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACT 232126
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || |||||||| || || | ||||| |||||||| ||||||
Sbjct 232127 TCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCATA 232174
Score = 100 bits (110), Expect = 2e-16
Identities = 162/230 (70%), Gaps = 5/230 (2%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTT-TGTATGTTGTAATCGCT 15195
|| |||||||| | | || | ||||||||| || || ||| || ||||||||||| |
Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATC--T 231775
Query 15196 TAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253
| || ||| | ||||| | |||||| || || | |||||||| || || ||
Sbjct 231776 GACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGA 231835
Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
||||| ||||||||||| ||||| ||| || |||| || |||||| | |||
Sbjct 231836 GGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCG 231895
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || | || ||||| || || || | |||||| || ||||| |||||
Sbjct 231896 ACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
>seq7061
Length=6671
Score = 96.9 bits (106), Expect = 3e-15
Identities = 159/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | |||||||| |||||||| | ||| ||||| ||||| ||||||||
Sbjct 2989 CCACCGCGTAATCTTAATACTAAATGTAAAGTGTTTTCTTTCTGTATATTGTAATCTTCG 2930
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | |||||||| ||||| ||||| | || || | ||| ||||| ||
Sbjct 2929 AGACGTTTTTCATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCT 2870
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||||||||||| || ||| ||| || || | | || |||||||| || ||
Sbjct 2869 ATTCCTTCTTTATCTTGAATCTTTTCT-TTGATATATTTGATGGTATCCGAATGCTCGCA 2811
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA 15362
||||| || |||| ||| || || | |||||| ||||| || ||||
Sbjct 2810 ATCTATCGTTATGGATTTCCCCGTTAAAGTTTTAACAAAGATCTGCA 2764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362114141184399
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