Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 98.7 8e-16
seq13894 95.1 1e-14
>seq12471
Length=105862
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||| |||||| | ||||| ||| | || || || || ||||| ||||| ||
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | | ||||||| ||||||||| ||| |||| || | ||| ||||| ||
Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| || || || || |||||| |||||| | ||| || |||| ||||| |
Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACT 72548
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|||| |||||||| || || || | |||||||||||| || |||||
Sbjct 72549 TCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||| |||||| | ||||| ||| | ||| || || || || || ||||||||
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930
| ||| |||||| |||| ||||| || || |||| | | ||| ||||||
Sbjct 73174 AGTGT----GCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGG 73229
Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990
|| | || |||||||| ||| || |||||| | ||| ||| |||| |||||
Sbjct 73230 AGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTC 73289
Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| ||||| ||||| || || | |||||||||||||| |||||
Sbjct 73290 AACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
>seq13894
Length=1211295
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/199 (71%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTT-TGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903
|| || |||||| || || |||||||| | || ||| | | || ||||| ||||||||
Sbjct 231748 GTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTACC 231807
Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963
||| | || | | |||||||||| || | ||| |||||||| |||||| ||
Sbjct 231808 GGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTCGCCTT 231867
Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | ||| |||||| ||| || ||| | || ||||| || || ||||||||
Sbjct 231868 CACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGT 231927
Query 19024 TTTGACAAAAATTTGCATT 19042
||| || ||||| ||||||
Sbjct 231928 TTTCACGAAAATCTGCATT 231946
Score = 82.4 bits (90), Expect = 6e-11
Identities = 166/246 (67%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 18799 AATATTTT---ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTT 18855
|||||||| ||| |||| |||| ||| | || |||| |||| || || |||||
Sbjct 231471 AATATTTTTAAATTACATTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTT 231530
Query 18856 TTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAG 18915
|| || |||||||| | || ||| | | || |||| || || |||||| |||| |
Sbjct 231531 CTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAA 231590
Query 18916 TCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGAC 18975
| || || || || | ||| |||||||| |||||| || || | | |
Sbjct 231591 ACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAAT 231650
Query 18976 AGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAAT 19035
|| || || || ||||| ||||||||| || || ||||||||||| || |||||
Sbjct 231651 GGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAAT 231710
Query 19036 TTGCAT 19041
|||||
Sbjct 231711 CTGCAT 231716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414498329640166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |