Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq12471 98.7 8e-16 seq13894 95.1 1e-14 >seq12471 Length=105862 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | ||||| ||| | || || || || ||||| ||||| || Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||| ||||||||| ||| |||| || | ||| ||||| || Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || |||||| |||||| | ||| || |||| ||||| | Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACT 72548 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||||||| || || || | |||||||||||| || ||||| Sbjct 72549 TCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | ||||| ||| | ||| || || || || || |||||||| Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173 Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | ||| |||||| |||| ||||| || || |||| | | ||| |||||| Sbjct 73174 AGTGT----GCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGG 73229 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 || | || |||||||| ||| || |||||| | ||| ||| |||| ||||| Sbjct 73230 AGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTC 73289 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| || || | |||||||||||||| ||||| Sbjct 73290 AACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 >seq13894 Length=1211295 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTT-TGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903 || || |||||| || || |||||||| | || ||| | | || ||||| |||||||| Sbjct 231748 GTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTACC 231807 Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963 ||| | || | | |||||||||| || | ||| |||||||| |||||| || Sbjct 231808 GGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTCGCCTT 231867 Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | ||| |||||| ||| || ||| | || ||||| || || |||||||| Sbjct 231868 CACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGT 231927 Query 19024 TTTGACAAAAATTTGCATT 19042 ||| || ||||| |||||| Sbjct 231928 TTTCACGAAAATCTGCATT 231946 Score = 82.4 bits (90), Expect = 6e-11 Identities = 166/246 (67%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 18799 AATATTTT---ATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTT 18855 |||||||| ||| |||| |||| ||| | || |||| |||| || || ||||| Sbjct 231471 AATATTTTTAAATTACATTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTT 231530 Query 18856 TTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAG 18915 || || |||||||| | || ||| | | || |||| || || |||||| |||| | Sbjct 231531 CTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAA 231590 Query 18916 TCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGAC 18975 | || || || || | ||| |||||||| |||||| || || | | | Sbjct 231591 ACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAAT 231650 Query 18976 AGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAAT 19035 || || || || ||||| ||||||||| || || ||||||||||| || ||||| Sbjct 231651 GGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAAT 231710 Query 19036 TTGCAT 19041 ||||| Sbjct 231711 CTGCAT 231716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414498329640166