Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 127 1e-24
seq12471 93.3 3e-14
>seq13894
Length=1211295
Score = 127 bits (140), Expect = 1e-24
Identities = 167/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| || ||||| |||||||||| ||||| || || || || |||||||| |||
Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
|| | | || |||||||||||||| ||| ||||||||||| ||||| | ||
Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609
Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
||||||||||| || | | ||||| || || | | ||| ||||| ||||
Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTCGCC---TTGACATTCTCAATGGTGTCCGATGGTTCG 231666
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || || ||||| || | |||||| |||||||| |||||
Sbjct 231667 ACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 113 bits (124), Expect = 3e-20
Identities = 166/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
|||||||||||| ||||| |||| ||| | ||||| || || || || ||||| || ||
Sbjct 232174 ACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGA 232233
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| | | || ||||||||||| || ||| ||||| |||||||| |||| ||
Sbjct 232234 TAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGG 232293
Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|| |||||||| || | | ||||| || || ||| |||||| ||| || |
Sbjct 232294 GATACCTTCTTTATCCTGGATTTTCGCC---TTCACGTTTTCAATCGTATCGGAAGGCTC 232350
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || |||||||| || || || || | ||||| || ||||| ||||| ||
Sbjct 232351 GACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
Score = 102 bits (112), Expect = 5e-17
Identities = 168/240 (70%), Gaps = 8/240 (3%)
Strand=Plus/Plus
Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192
||||| || || ||||| || |||| || | ||| | || |||||||| || || ||
Sbjct 231937 AATCTGCATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTT 231996
Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252
|||||| ||||| | | || |||||||||||||| || || || ||||||||
Sbjct 231997 GTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTG 232056
Query 33253 GTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309
|| | || ||||| ||||| || | | ||||| || || ||| ||| |||||
Sbjct 232057 ATCTGGTGGGATGCCCTCTTTGTCTTGGATTTTCGCC---TTAACGTTTTCAATGGTGTC 232113
Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||| || |||| ||| || |||||||| || | ||||| || ||||| |||||
Sbjct 232114 TGATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/232 (70%), Gaps = 7/232 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTT-TGTATATTGTAATCAG 33200
||||||||| || |||| ||| | ||| | ||||| || ||| || || |||||||| |
Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776
Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260
|||| | | || |||| ||| || || ||| || ||||| ||||| |||| |
Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836
Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317
| ||||||||||| || | | ||||| || || ||| || || ||| ||||
Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCC---TTCACGTTTTCGATTGTATCGGAAGGTT 231893
Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || || || || || | |||||| |||||||| |||||
Sbjct 231894 CGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
>seq12471
Length=105862
Score = 93.3 bits (102), Expect = 3e-14
Identities = 164/235 (70%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| |||| |||| ||| ||||||||||| ||||| ||||| || || ||||| || |
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC-GCT 73690
Query 33203 AAAT-TGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| | || | ||| || | ||||||||| || || || || || || || | ||
Sbjct 73691 AAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGG 73750
Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|| ||||| || || |||| ||| || || | | ||||||||| | || |
Sbjct 73751 AATTCCTTCCTTATCCTGAATCTTGGCC---TTCACGTTCTCGATCGTGTCGCTTGGCTC 73807
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|| |||| ||| || |||||||| || || ||||| || ||||| |||||| ||
Sbjct 73808 CACCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGATT 73862
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||||||||| |||| | |||||| || | || || ||||| || || ||||| ||
Sbjct 72368 ACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCT 72427
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
||| || | || ||||| || || || ||| || | ||| || || || | ||
Sbjct 72428 TAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGG 72487
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| ||||| || || ||| |||||| | | ||||||||| | || | |||
Sbjct 72488 GATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAAC 72547
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || ||||| ||||||||||| || || || |||||
Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318720337481622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |