Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq13894 127 1e-24 seq12471 93.3 3e-14 >seq13894 Length=1211295 Score = 127 bits (140), Expect = 1e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || ||||| |||||||||| ||||| || || || || |||||||| ||| Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || |||||||||||||| ||| ||||||||||| ||||| | || Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | ||||| || || | | ||| ||||| |||| Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTCGCC---TTGACATTCTCAATGGTGTCCGATGGTTCG 231666 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| || | |||||| |||||||| ||||| Sbjct 231667 ACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 113 bits (124), Expect = 3e-20 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||||||||| ||||| |||| ||| | ||||| || || || || ||||| || || Sbjct 232174 ACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGA 232233 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | || ||||||||||| || ||| ||||| |||||||| |||| || Sbjct 232234 TAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGG 232293 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || | | ||||| || || ||| |||||| ||| || | Sbjct 232294 GATACCTTCTTTATCCTGGATTTTCGCC---TTCACGTTTTCAATCGTATCGGAAGGCTC 232350 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||| || || || || | ||||| || ||||| ||||| || Sbjct 232351 GACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 Score = 102 bits (112), Expect = 5e-17 Identities = 168/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || |||| || | ||| | || |||||||| || || || Sbjct 231937 AATCTGCATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTT 231996 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 |||||| ||||| | | || |||||||||||||| || || || |||||||| Sbjct 231997 GTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTG 232056 Query 33253 GTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309 || | || ||||| ||||| || | | ||||| || || ||| ||| ||||| Sbjct 232057 ATCTGGTGGGATGCCCTCTTTGTCTTGGATTTTCGCC---TTAACGTTTTCAATGGTGTC 232113 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || |||| ||| || |||||||| || | ||||| || ||||| ||||| Sbjct 232114 TGATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTT-TGTATATTGTAATCAG 33200 ||||||||| || |||| ||| | ||| | ||||| || ||| || || |||||||| | Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 |||| | | || |||| ||| || || ||| || ||||| ||||| |||| | Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836 Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | ||||||||||| || | | ||||| || || ||| || || ||| |||| Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCC---TTCACGTTTTCGATTGTATCGGAAGGTT 231893 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || || | |||||| |||||||| ||||| Sbjct 231894 CGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 >seq12471 Length=105862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| |||| ||| ||||||||||| ||||| ||||| || || ||||| || | Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC-GCT 73690 Query 33203 AAAT-TGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | || | ||| || | ||||||||| || || || || || || || | || Sbjct 73691 AAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGG 73750 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || |||| ||| || || | | ||||||||| | || | Sbjct 73751 AATTCCTTCCTTATCCTGAATCTTGGCC---TTCACGTTCTCGATCGTGTCGCTTGGCTC 73807 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || |||| ||| || |||||||| || || ||||| || ||||| |||||| || Sbjct 73808 CACCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGATT 73862 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||||||||| |||| | |||||| || | || || ||||| || || ||||| || Sbjct 72368 ACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCT 72427 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| || | || ||||| || || || ||| || | ||| || || || | || Sbjct 72428 TAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGG 72487 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| |||||| | | ||||||||| | || | ||| Sbjct 72488 GATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAAC 72547 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || ||||| ||||||||||| || || || ||||| Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318720337481622