Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 114 9e-21
seq13894 105 5e-18
seq7061 105 5e-18
>seq12471
Length=105862
Score = 114 bits (126), Expect = 9e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| |||||||| || | |||||| || ||||| ||||| || || || |||||| |
Sbjct 73113 ACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCT 73172
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| | || |||| |||||||||||||| || || ||||| || || || ||| ||||
Sbjct 73173 GAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 73232
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| |||||||| ||| ||| || ||| || | | | ||| || ||||| ||
Sbjct 73233 AATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAAC 73292
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||| |||||| ||||| || || | || || ||||| || |||||
Sbjct 73293 TTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| |||||||| | | |||||||| || ||| || ||||| || || |||||| |
Sbjct 72596 ACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCT 72655
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
||| ||| |||| |||||||||||||| || || ||||| || || || ||| ||||
Sbjct 72656 CAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGG 72715
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| || ||||||||| || || |||||| | | | || || || || ||
Sbjct 72716 GATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAAC 72775
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| | || || || || || || || ||||| || || |||||||||
Sbjct 72776 CTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824
>seq13894
Length=1211295
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| || | || |||| ||| || || || || || || || || |||
Sbjct 232174 ACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGA 232233
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
||| || |||| |||||||| || || ||||| || || |||||||| ||| | ||
Sbjct 232234 TAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGG 232293
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| |||||||||||| ||||| || || | ||| ||||| | ||||| ||
Sbjct 232294 GATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGAC 232353
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||| || || || ||||||||||| || |||||||| || |||||
Sbjct 232354 TTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
|| |||||||||| || |||||||| || || || || || || || ||||||
Sbjct 231490 CCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGAC 231549
Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014
|| || |||| |||||||| ||||| ||||| || || ||||| ||||| | ||
Sbjct 231550 AAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGG 231609
Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074
| |||||||| || ||||| ||||| | ||| || || | || || ||
Sbjct 231610 ATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACT 231669
Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||| ||||| || || ||||||||||| ||||| || || |||||
Sbjct 231670 TCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
>seq7061
Length=6671
Score = 105 bits (116), Expect = 5e-18
Identities = 165/232 (71%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952
|||| || | |||||||| || ||||||| ||| | ||||| || ||||| ||||| |
Sbjct 2991 AACCACCGCGTAATCTTAATACTAAATGTAAAGTGTTTTCTTTCTGTATATTGTAATCTT 2932
Query 43953 TTAATTGACGCT---CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCT 44009
| |||| | |||| || || ||||| || ||||| || || | ||||||||||
Sbjct 2931 CGA---GACGTTTTTCATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCG 2875
Query 44010 GAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA-GCAACAGTATCTGCCGGC 44068
| | || |||||||||||| ||| |||| ||||| ||| | ||||| | ||
Sbjct 2874 GTGCTATTCCTTCTTTATCTTGAATCTTTTCTTTGA-TATATTTGATGGTATCCGAATGC 2816
Query 44069 TCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCA 44120
|| ||| | ||| || | ||| || |||||||| || ||||| || ||||
Sbjct 2815 TCGCAATCTATCGTTATGGATTTCCCCGTTAAAGTTTTAACAAAGATCTGCA 2764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354713870745372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |