Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq12471 98.7 8e-16 seq13894 95.1 1e-14 >seq12471 Length=105862 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||||||| || || ||||| | || || || || |||||||| || || Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC-GCT 73690 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || |||| || |||||||| || || |||| || ||||| ||||| || Sbjct 73691 AAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGG 73750 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | | || || ||| | | |||| Sbjct 73751 AATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| || ||||| ||||| |||||||||||||| Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | ||| || ||||| ||| || || ||||||||||| || || Sbjct 72368 ACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTC-GC 72426 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | ||||||| ||| |||||| | |||| | |||||| ||||| | Sbjct 72427 TTAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTG 72486 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| || |||||| || | | | | || || ||| | | ||| Sbjct 72487 GGATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAA 72546 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || || || |||||||| ||||| |||||||| Sbjct 72547 CTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | ||| || ||||| || || || || ||||||||||| || Sbjct 73113 ACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATC-GC 73171 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | ||| || | || |||| || || || || |||| |||||||| |||||| | Sbjct 73172 TGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAG 73231 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| ||||| ||| || || | | | | || || ||| | | ||| Sbjct 73232 GAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAA 73291 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| || ||||| ||||| |||||||||||||| Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 >seq13894 Length=1211295 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || | |||||| || ||||| || |||||||| || | || ||| | || Sbjct 232190 AATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCT 232249 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| ||||| || | ||||||| || ||||||||| || | || ||| || ||| Sbjct 232250 TCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCC 232309 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| ||| | | || ||||||| || ||| |||| |||||||| Sbjct 232310 TGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTC 232369 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| | |||||||||||||||||||| Sbjct 232370 TTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || ||||| || || ||||| || ||||||||||| | ||| ||| | || Sbjct 231505 AAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCT 231564 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| ||||| || | |||||||||| || || || || | | ||| |||||| Sbjct 231565 TCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCC 231624 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| ||||| | | | ||||| || | | || |||| || ||||| Sbjct 231625 TGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTC 231684 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| | ||||||||| ||||||||||| Sbjct 231685 TTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTT-TGAATGTTGTAATCAG 48557 ||| || | ||| | | ||| | |||||| || |||||| || ||||||||||| | Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776 Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| ||| | || ||||| || |||||| | | || ||||||||||||||| | Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| ||||| |||||| ||| | | || ||||||| || || Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || | ||||||||| ||||||||||| Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421175529988739