Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 98.7 8e-16
seq13894 95.1 1e-14
>seq12471
Length=105862
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| |||||||| || || ||||| | || || || || |||||||| || ||
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC-GCT 73690
Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| ||| || |||| || |||||||| || || |||| || ||||| ||||| ||
Sbjct 73691 AAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGG 73750
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| ||| || ||| | | | || || ||| | | ||||
Sbjct 73751 AATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCAC 73810
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || || ||||| || ||||| ||||| ||||||||||||||
Sbjct 73811 CTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || | |||||| | ||| || ||||| ||| || || ||||||||||| || ||
Sbjct 72368 ACCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTC-GC 72426
Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| || || | ||||||| ||| |||||| | |||| | |||||| ||||| |
Sbjct 72427 TTAAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTG 72486
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | |||||| || |||||| || | | | | || || ||| | | |||
Sbjct 72487 GGATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAA 72546
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||| || ||||| || || || |||||||| ||||| ||||||||
Sbjct 72547 CTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || | |||||| | ||| || ||||| || || || || ||||||||||| ||
Sbjct 73113 ACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATC-GC 73171
Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| ||| || | || |||| || || || || |||| |||||||| |||||| |
Sbjct 73172 TGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAG 73231
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | ||| ||||| ||| || || | | | | || || ||| | | |||
Sbjct 73232 GAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAA 73291
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||| || || ||||| || ||||| ||||| ||||||||||||||
Sbjct 73292 CTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
>seq13894
Length=1211295
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
|| || | |||||| || ||||| || |||||||| || | || ||| | ||
Sbjct 232190 AATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCT 232249
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|||| ||||| || | ||||||| || ||||||||| || | || ||| || |||
Sbjct 232250 TCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCC 232309
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|||||| ||| | | || ||||||| || ||| |||| ||||||||
Sbjct 232310 TGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTC 232369
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||||||| | ||||||||||||||||||||
Sbjct 232370 TTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
|| || ||||| || || ||||| || ||||||||||| | ||| ||| | ||
Sbjct 231505 AAAACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCT 231564
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|||| ||||| || | |||||||||| || || || || | | ||| ||||||
Sbjct 231565 TCCAATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCC 231624
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|||||| ||||| | | | ||||| || | | || |||| || |||||
Sbjct 231625 TGGATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTC 231684
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| | ||||||||| |||||||||||
Sbjct 231685 TTTCCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/229 (69%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTT-TGAATGTTGTAATCAG 48557
||| || | ||| | | ||| | |||||| || |||||| || ||||||||||| |
Sbjct 231717 ACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTG 231776
Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
||| ||| | || ||||| || |||||| | | || ||||||||||||||| |
Sbjct 231777 ACAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAG 231836
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | ||| ||||| |||||| ||| | | || ||||||| || ||
Sbjct 231837 GAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGA 231896
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || || | ||||||||| |||||||||||
Sbjct 231897 CTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421175529988739
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |