Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq13971 96.9 2e-15
seq13629 96.9 2e-15
seq13399 93.3 2e-14
seq9632 93.3 2e-14
seq12470 84.2 1e-11
>seq13971
Length=430229
Score = 96.9 bits (106), Expect = 2e-15
Identities = 88/110 (80%), Gaps = 4/110 (4%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCT 11485
|||| || ||| || ||||| || || ||||| || |||||||||| ||||||
Sbjct 93910 AAATGTAAAATAAAAGAAAAAAAAATTTCATGGCCCGTGGGGGGATCGAACCCACGACCT 93969
Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534
||||||||||||||| |||||| |||||||||||||| ||||| |||||
Sbjct 93970 CCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACGGGCCAGTCGA 94019
>seq13629
Length=734635
Score = 96.9 bits (106), Expect = 2e-15
Identities = 78/94 (83%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 11438 ATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||| | ||||||| | | ||||||| || |||||||||| |||||| |||||||||
Sbjct 303795 ATTTAAAAAAAATAATCATTTGGCCCGTGGGGGGATCGAACCCACGACCTCCGCGTTATT 303736
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| |||||| |||||||||||||| |||||
Sbjct 303735 AGCACGGCGCTCTAACCAACTGAGCTAACGGGCC 303702
>seq13399
Length=567187
Score = 93.3 bits (102), Expect = 2e-14
Identities = 74/89 (83%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||| ||| |||||| || |||||||||| |||||| ||||||||||||||
Sbjct 133805 AACAAAAATTCAG--TGGCCCGTGGGGGGATCGAACCCACGACCTCCGCGTTATTAGCAC 133862
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
| |||||| |||||||||||||| |||||
Sbjct 133863 GGCGCTCTAACCAACTGAGCTAACGGGCC 133891
>seq9632
Length=129452
Score = 93.3 bits (102), Expect = 2e-14
Identities = 75/90 (83%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||||||| | ||||| || |||||||||| |||||| ||||||||||||||
Sbjct 19678 AATAAAAAATTTCGT-GGCCCGTGGGGGGATCGAACCCACGACCTCCGCGTTATTAGCAC 19620
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530
| |||||| |||||||||||||| ||||||
Sbjct 19619 GGCGCTCTAACCAACTGAGCTAACGGGCCG 19590
>seq12470
Length=338486
Score = 84.2 bits (92), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||| || ||||||| || |||||||||| ||||| |||||||||||||||
Sbjct 114840 AAAAAACCACCATTGGCCTGTGTGGGGATCGAACCCAAGACCTCCGCGTTATTAGCACGG 114899
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| |||||||||||||| ||||
Sbjct 114900 CGCTCTAACCAACTGAGCTAACAGGCC 114926
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261444227927164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |