Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq13971 96.9 2e-15 seq13629 96.9 2e-15 seq13399 93.3 2e-14 seq9632 93.3 2e-14 seq12470 84.2 1e-11 >seq13971 Length=430229 Score = 96.9 bits (106), Expect = 2e-15 Identities = 88/110 (80%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||| || ||| || ||||| || || ||||| || |||||||||| |||||| Sbjct 93910 AAATGTAAAATAAAAGAAAAAAAAATTTCATGGCCCGTGGGGGGATCGAACCCACGACCT 93969 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 ||||||||||||||| |||||| |||||||||||||| ||||| ||||| Sbjct 93970 CCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACGGGCCAGTCGA 94019 >seq13629 Length=734635 Score = 96.9 bits (106), Expect = 2e-15 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| | ||||||| | | ||||||| || |||||||||| |||||| ||||||||| Sbjct 303795 ATTTAAAAAAAATAATCATTTGGCCCGTGGGGGGATCGAACCCACGACCTCCGCGTTATT 303736 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||| |||||||||||||| ||||| Sbjct 303735 AGCACGGCGCTCTAACCAACTGAGCTAACGGGCC 303702 >seq13399 Length=567187 Score = 93.3 bits (102), Expect = 2e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| ||| |||||| || |||||||||| |||||| |||||||||||||| Sbjct 133805 AACAAAAATTCAG--TGGCCCGTGGGGGGATCGAACCCACGACCTCCGCGTTATTAGCAC 133862 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 | |||||| |||||||||||||| ||||| Sbjct 133863 GGCGCTCTAACCAACTGAGCTAACGGGCC 133891 >seq9632 Length=129452 Score = 93.3 bits (102), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| | ||||| || |||||||||| |||||| |||||||||||||| Sbjct 19678 AATAAAAAATTTCGT-GGCCCGTGGGGGGATCGAACCCACGACCTCCGCGTTATTAGCAC 19620 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 | |||||| |||||||||||||| |||||| Sbjct 19619 GGCGCTCTAACCAACTGAGCTAACGGGCCG 19590 >seq12470 Length=338486 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || ||||||| || |||||||||| ||||| ||||||||||||||| Sbjct 114840 AAAAAACCACCATTGGCCTGTGTGGGGATCGAACCCAAGACCTCCGCGTTATTAGCACGG 114899 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 114900 CGCTCTAACCAACTGAGCTAACAGGCC 114926 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261444227927164