Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 147 2e-30
seq12471 134 1e-26
seq7061 86.0 6e-12
>seq13894
Length=1211295
Score = 147 bits (162), Expect = 2e-30
Identities = 180/245 (73%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 94763 TTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT 94822
|||||||| ||||| ||| |||||||||||||| ||||| |||| ||| ||||||||
Sbjct 231475 TTTTTAAA---TTACATTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTC 231531
Query 94823 TGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAAT 94882
|| | ||| |||||| || || | ||| |||| || ||||| |||| |||||
Sbjct 231532 TGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAA 231591
Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942
| ||| || || || || || ||||||||||| | ||||| |||||||| | |
Sbjct 231592 CGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATG 231651
Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002
||||| | | ||||| || | || ||||| ||||| || | ||||||||| || |||
Sbjct 231652 GTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATC 231711
Query 95003 TGCAT 95007
|||||
Sbjct 231712 TGCAT 231716
Score = 141 bits (156), Expect = 8e-29
Identities = 169/228 (74%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT-TGCACGTTATAATCGCT 94839
|| |||||||| |||| ||| | || | || ||||||||| || | ||| |||||
Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777
Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899
|| || | ||| ||||| ||||| ||| ||||||| || | |||||||| |||||
Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837
Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959
||| ||||||||||| | ||||| ||||| ||| ||| || || | | |||||
Sbjct 231838 AATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGAC 231897
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| ||||||||| || ||||| | ||||||||| || ||||||||
Sbjct 231898 TTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 125 bits (138), Expect = 6e-24
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| | | || ||| |||||||| |||| || | || | || || || || || | |
Sbjct 231935 AAAATCTGCATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATG 231994
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| |||||| || || | ||| |||| || ||||| | ||||| |||| ||||
Sbjct 231995 TTGTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGC 232054
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|||||||| || || || |||||||| | ||||| ||||| ||| | | |||||
Sbjct 232055 TGATCTGGTGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCT 232114
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | ||||| || | ||||||||||||||||| | ||||||||||| ||||||||
Sbjct 232115 GATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Score = 107 bits (118), Expect = 2e-18
Identities = 170/242 (70%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| | | || || ||||| || ||||| |||| || | || |||||||| || |
Sbjct 232162 AAAAATCTGCATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGAT 232221
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
||| || ||| ||| ||| | ||| |||| || || || |||| ||||||| |
Sbjct 232222 GTTGTAGTCGG--ATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGT 232279
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|||||||| || || ||||||||||| || | ||||| ||||| ||| | | ||
Sbjct 232280 TGCTGATCCGGTGGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTA 232339
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|| | | ||||| || | || ||||| || || || | ||||||||||| ||||||
Sbjct 232340 TCGGAAGGCTCGACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGC 232399
Query 95006 AT 95007
||
Sbjct 232400 AT 232401
>seq12471
Length=105862
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||| | | ||||||||| | || ||||| || || | ||| || |||||
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | |||||||| |||||| ||| |||| || | | || ||||| || ||
Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959
|| ||||| || || | |||||| || || || ||| ||||| || ||| || ||
Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTC-GCTTGGCTCAAC 72547
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 134 bits (148), Expect = 1e-26
Identities = 173/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836
|| |||||||| ||| | ||| ||||| ||||| || ||||| || || | ||| || ||
Sbjct 73628 CATTCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC 73687
Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896
||| | ||| | || || ||||| ||||| | || || |||| || ||||| ||
Sbjct 73688 GCTAAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGG 73747
Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955
|||||| ||||| || || | ||| || ||||| ||| ||| ||||| || ||| |
Sbjct 73748 AGGAATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTTGGCT 73806
Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
| || || | || || ||||||||||| || ||||| ||||| ||||||||| ||
Sbjct 73807 CCACCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGATT 73862
Score = 131 bits (144), Expect = 2e-25
Identities = 159/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854
||| |||||||| | || || |||||||| | ||| |||||||||| ||| |||
Sbjct 72155 CAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATC 72214
Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914
||| || ||||| || ||||||| |||| || || || || ||||| || ||||||||
Sbjct 72215 CTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTC 72274
Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGG 94973
| || || |||||||| | | |||||| | ||| ||||| || | |||||||
Sbjct 72275 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCA-CTTGGCTCGACTTCCAATGTGATGG 72333
Query 94974 TTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || ||||| || ||||| ||||||||||||||
Sbjct 72334 TCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 131 bits (144), Expect = 2e-25
Identities = 172/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || |||||||| | | ||||||||| | || ||||| || || | ||| |
Sbjct 73106 TTTGCATACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGT 73165
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
||||||| | ||| ||| |||| |||||||| | || || || | || ||||
Sbjct 73166 AATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGAT 73225
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| |||||||| ||||||||||| | ||| || || || || ||| |||||| || |
Sbjct 73226 CCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTC-GCTT 73284
Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || | ||| || ||||||||||| || ||||| ||||| ||||||||
Sbjct 73285 GGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 125 bits (138), Expect = 6e-24
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | ||| ||||| || || | ||| || ||||||| |||| ||| ||
Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 73480
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||||| ||| | ||||| || | || |||||||||||||| ||||||||||| |
Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976
|| || || || || | | || ||| | ||| ||||| || | || |||||||
Sbjct 73541 GATCTTGGCTTTCACATTCTCAATGGTATCA-CTTGGCTCGACTTCCAAGGTAATGGTTT 73599
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||| || ||||| || |||||||||||
Sbjct 73600 TTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
Score = 116 bits (128), Expect = 3e-21
Identities = 157/217 (72%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
|| || ||||| || | || ||||| || || | ||| |||||||| | |||| ||
Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAA--GTGTGCGAC 72955
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||| || || ||||| || ||||||||| | || |||||||| || || |||||||
Sbjct 72956 CATCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTT 73015
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | || || || ||||| ||| ||||||| | ||||| || | |||||
Sbjct 73016 TGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGA 73075
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || ||||| || ||||| || ||||| |||||
Sbjct 73076 TGGTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 109 bits (120), Expect = 5e-19
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||| || | ||||| |||| ||| ||||||||||| | ||| |||||||||
Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| ||| || ||| |||| |||||||| | || || || | || ||||| ||||
Sbjct 72657 --AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAG 72714
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| || || ||||| || | || || || ||||| ||| |||||| | || |
Sbjct 72715 GGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAA 72774
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| || | |||||||| || ||||| | || || || ||||| |||||||
Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATGC 72825
>seq7061
Length=6671
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || | |||||| || ||||||||||||||||||| || || | || ||||||||
Sbjct 2918 ATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTT 2859
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | ||| ||| | |||| || || || | || ||| || ||||| ||
Sbjct 2858 ATCTTGAATCTTTTCTTTGATATATTTGATGGTATCCGAATGCTCGCAATCTATCGTTAT 2799
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
|| ||| || || | |||||| |||||||||||||
Sbjct 2798 GGATTTCCCCGTTAAAGTTTTAACAAAGATCTGCA 2764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448208607950040
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