Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13894 147 2e-30 seq12471 134 1e-26 seq7061 86.0 6e-12 >seq13894 Length=1211295 Score = 147 bits (162), Expect = 2e-30 Identities = 180/245 (73%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 94763 TTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT 94822 |||||||| ||||| ||| |||||||||||||| ||||| |||| ||| |||||||| Sbjct 231475 TTTTTAAA---TTACATTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTC 231531 Query 94823 TGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAAT 94882 || | ||| |||||| || || | ||| |||| || ||||| |||| ||||| Sbjct 231532 TGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAA 231591 Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 | ||| || || || || || ||||||||||| | ||||| |||||||| | | Sbjct 231592 CGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATG 231651 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 ||||| | | ||||| || | || ||||| ||||| || | ||||||||| || ||| Sbjct 231652 GTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATC 231711 Query 95003 TGCAT 95007 ||||| Sbjct 231712 TGCAT 231716 Score = 141 bits (156), Expect = 8e-29 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT-TGCACGTTATAATCGCT 94839 || |||||||| |||| ||| | || | || ||||||||| || | ||| ||||| Sbjct 231718 CCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGA 231777 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || | ||| ||||| ||||| ||| ||||||| || | |||||||| ||||| Sbjct 231778 CAAGGTTCGGCCATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGG 231837 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||||||||| | ||||| ||||| ||| ||| || || | | ||||| Sbjct 231838 AATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGAC 231897 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||||||| || ||||| | ||||||||| || |||||||| Sbjct 231898 TTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| |||||||| |||| || | || | || || || || || | | Sbjct 231935 AAAATCTGCATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATG 231994 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||| || || | ||| |||| || ||||| | ||||| |||| |||| Sbjct 231995 TTGTAATCGGACAAGGTCCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGC 232054 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || || || |||||||| | ||||| ||||| ||| | | ||||| Sbjct 232055 TGATCTGGTGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCT 232114 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | ||||||||||||||||| | ||||||||||| |||||||| Sbjct 232115 GATGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Score = 107 bits (118), Expect = 2e-18 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| || ||||| |||| || | || |||||||| || | Sbjct 232162 AAAAATCTGCATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGAT 232221 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || ||| ||| ||| | ||| |||| || || || |||| ||||||| | Sbjct 232222 GTTGTAGTCGG--ATAAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGT 232279 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| || || ||||||||||| || | ||||| ||||| ||| | | || Sbjct 232280 TGCTGATCCGGTGGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTA 232339 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | ||||| || | || ||||| || || || | ||||||||||| |||||| Sbjct 232340 TCGGAAGGCTCGACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGC 232399 Query 95006 AT 95007 || Sbjct 232400 AT 232401 >seq12471 Length=105862 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| | | ||||||||| | || ||||| || || | ||| || ||||| Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||||||| |||||| ||| |||| || | | || ||||| || || Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||| || || | |||||| || || || ||| ||||| || ||| || || Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCTTTTACATTCTCGATCGTGTC-GCTTGGCTCAAC 72547 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| ||||||||||||||||| |||||||||||||| Sbjct 72548 TTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 134 bits (148), Expect = 1e-26 Identities = 173/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||| ||| | ||| ||||| ||||| || ||||| || || | ||| || || Sbjct 73628 CATTCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC 73687 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 ||| | ||| | || || ||||| ||||| | || || |||| || ||||| || Sbjct 73688 GCTAAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGG 73747 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955 |||||| ||||| || || | ||| || ||||| ||| ||| ||||| || ||| | Sbjct 73748 AGGAATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTTGGCT 73806 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | || || | || || ||||||||||| || ||||| ||||| ||||||||| || Sbjct 73807 CCACCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGATT 73862 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 ||| |||||||| | || || |||||||| | ||| |||||||||| ||| ||| Sbjct 72155 CAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATC 72214 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||| || ||||| || ||||||| |||| || || || || ||||| || |||||||| Sbjct 72215 CTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTC 72274 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGG 94973 | || || |||||||| | | |||||| | ||| ||||| || | ||||||| Sbjct 72275 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCA-CTTGGCTCGACTTCCAATGTGATGG 72333 Query 94974 TTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| || ||||| |||||||||||||| Sbjct 72334 TCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 131 bits (144), Expect = 2e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||| | | ||||||||| | || ||||| || || | ||| | Sbjct 73106 TTTGCATACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGT 73165 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||||| | ||| ||| |||| |||||||| | || || || | || |||| Sbjct 73166 AATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGAT 73225 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| ||||||||||| | ||| || || || || ||| |||||| || | Sbjct 73226 CCGGAGGAATCCCTTCTTTGTCTTGAATCTTGGCTTTTACATTCTCGATAGTGTC-GCTT 73284 Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || ||||||||||| || ||||| ||||| |||||||| Sbjct 73285 GGCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| ||||| || || | ||| || ||||||| |||| ||| || Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 73480 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| ||| | ||||| || | || |||||||||||||| ||||||||||| | Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 || || || || || | | || ||| | ||| ||||| || | || ||||||| Sbjct 73541 GATCTTGGCTTTCACATTCTCAATGGTATCA-CTTGGCTCGACTTCCAAGGTAATGGTTT 73599 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || ||||| || ||||||||||| Sbjct 73600 TTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630 Score = 116 bits (128), Expect = 3e-21 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 || || ||||| || | || ||||| || || | ||| |||||||| | |||| || Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAA--GTGTGCGAC 72955 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || || ||||| || ||||||||| | || |||||||| || || ||||||| Sbjct 72956 CATCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTT 73015 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || || ||||| ||| ||||||| | ||||| || | ||||| Sbjct 73016 TGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGA 73075 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || ||||| || ||||| ||||| Sbjct 73076 TGGTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| || | ||||| |||| ||| ||||||||||| | ||| ||||||||| Sbjct 72597 CCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTC 72656 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| || ||| |||| |||||||| | || || || | || ||||| |||| Sbjct 72657 --AATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAG 72714 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || ||||| || | || || || ||||| ||| |||||| | || | Sbjct 72715 GGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAA 72774 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||| || ||||| | || || || ||||| ||||||| Sbjct 72775 CCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATGC 72825 >seq7061 Length=6671 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || | |||||| || ||||||||||||||||||| || || | || |||||||| Sbjct 2918 ATCTTCTAACTGTTTACCAGCAAAGATTAATCTTTGCTGGTCCGGTGCTATTCCTTCTTT 2859 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| ||| | |||| || || || | || ||| || ||||| || Sbjct 2858 ATCTTGAATCTTTTCTTTGATATATTTGATGGTATCCGAATGCTCGCAATCTATCGTTAT 2799 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || ||| || || | |||||| ||||||||||||| Sbjct 2798 GGATTTCCCCGTTAAAGTTTTAACAAAGATCTGCA 2764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448208607950040