Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13860 181 2e-41 seq654 181 2e-41 seq14067 172 9e-39 seq11813 172 9e-39 seq3355 163 4e-36 seq6 145 1e-30 >seq13860 Length=567148 Score = 181 bits (200), Expect = 2e-41 Identities = 196/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| | |||||| |||||||||||||| ||||||||||| |||||| Sbjct 325194 GCCAAACGTCATCGCAAAATTCTTCGTGATAACATCCAAGGGATCACCAAGCCCGCTATC 325135 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||||||||| || || || | || || ||| | |||||||| | Sbjct 325134 CGTCGTTTGGCTCGTCGTGGTGGCGTGAAACGCATTTCCGGGTTGATTTATGAAGAAACA 325075 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||||||||| | || | | | ||||||| ||||| | ||| || || Sbjct 325074 CGCGGTGTTTTGAAGGTGTTTTTGGAAAATGTTATCCGAGATGCCGTTACCTACACTGAA 325015 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||| |||| | ||||| ||||| |||||||| | || || || |||||||| || || Sbjct 325014 CACTCTAAGAGGAAGACGGTCACTGCCATGGATGTTGTTTACGCTTTGAAACGACAGGGT 324955 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || || ||||| Sbjct 324954 CGTACTTTGTACGGGTTTGG 324935 Score = 181 bits (200), Expect = 2e-41 Identities = 196/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| | ||| || |||||||||||||||||||||||||| |||||| Sbjct 460263 GCCAAACGTCATCGCAAAATTCTCCGTGATAACATCCAAGGAATCACCAAGCCCGCTATC 460322 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||||||||| || || || | || || ||| | |||||||| | Sbjct 460323 CGTCGTTTGGCTCGTCGTGGTGGCGTGAAACGCATTTCCGGGTTGATTTATGAAGAAACA 460382 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||||||||| | || | | | ||||||| ||||| | ||| || || Sbjct 460383 CGCGGTGTTTTGAAGGTGTTTTTGGAAAATGTTATCCGAGATGCCGTTACCTACACTGAA 460442 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||| |||| | ||||| ||||| |||||||| | || || || |||||| | || || Sbjct 460443 CACTCTAAGAGAAAGACGGTCACTGCCATGGATGTTGTTTACGCTTTGAAAAGACAGGGT 460502 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || |||||||| Sbjct 460503 CGTACTTTGTACGGTTTTGG 460522 >seq654 Length=271643 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||||| | | | || |||||||||||||| ||||||||||| ||||| Sbjct 64206 CGCTAAACGTCATCGCAAAGTTTTGCGTGATAACATCCAAGGTATCACCAAGCCTGCTAT 64265 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||||||||| ||||| || ||| | || || ||| |||| || |||| Sbjct 64266 CCGCCGTCTGGCTCGTCGTGGCGGAGTGAAACGTATTTCCGGTTTGATCTACGAGGAGAC 64325 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | || | | | ||| || | |||||| || |||||| || Sbjct 64326 CCGAGGTGTACTGAAGGTTTTTTTGGAAAACGTGATTCGTGATGCCGTCACCTATACTGA 64385 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| | ||||| | |||||||| ||||| || || || Sbjct 64386 ACACGCCAAGAGGAAGACCGTCACCGCTATGGACGTTGTCTATGCGTTGAAGCGACAGGG 64445 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 64446 ACGTACTTTGTACGGATTCGGCGGTTAA 64473 >seq14067 Length=214053 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| | |||||| |||||||||||||| || || || || || || Sbjct 173626 CGCGAAACGCCATCGCAAAGTTCTTCGTGATAACATCCAAGGCATTACGAAACCGGCAAT 173685 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| || |||||| | || || || | |||||||| | Sbjct 173686 CCGTCGTTTGGCTCGTCGTGGTGGCGTGAAGCGTATTTCCGGTTTAATTTATGAAGAAAC 173745 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| ||||| | ||| | | | || |||| |||||| | || || || Sbjct 173746 TCGCGGTGTTCTGAAGGTTTTCTTGGAAAATGTCATCCGAGATGCTGTTACGTACACGGA 173805 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || | |||||| | || ||||| |||||||| || || Sbjct 173806 ACACGCCAAGAGGAAGACTGTTACTGCAATGGATGTTGTTTATGCTTTGAAACGACAGGG 173865 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 173866 GCGTACTTTGTACGGTTTTGGCGGTTAA 173893 >seq11813 Length=2181 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| |||||| || |||||||| |||||||| || ||||| || Sbjct 1180 CGCGAAACGCCATCGCAAGGTTCTTCGCGACAACATCCAGGGAATCACGAAACCAGCGAT 1121 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || |||||||||||||||||||| |||| ||| | ||||||| |||| Sbjct 1120 TCGTCGTCTCGCCCGTCGTGGTGGAGTCAAGCGCATCTCCGGACTCATCTATGAGGAGAC 1061 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||| Sbjct 1060 CCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGA 1001 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| ||||||| || | || ||||| || Sbjct 1000 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGTCAGGG 941 Query 16672 CCG 16674 ||| Sbjct 940 CCG 938 >seq3355 Length=1391 Score = 163 bits (180), Expect = 4e-36 Identities = 180/242 (74%), Gaps = 11/242 (5%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| || ||||| || || ||||||||||| || || Sbjct 665 GCCAAGCGCCATCGCAAAGTGCTTCGCGACAACATTCAGGGCATCACCAAGCCCGCGATT 606 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| ||||||||||||||||||||| |||| ||| | ||||||| |||| Sbjct 605 CGTCGTCTGGCCCGTCGTGGTGGAGTCAAGCGTATCTCAGGACTCATCTATGAGGAGACC 546 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||| ||| |||| ||| || || ||| |||| Sbjct 545 CGCGGTG-----------TTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACTGCGAG 497 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| ||||||| || | || ||||||||| Sbjct 496 CACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGTCAAGGC 437 Query 16673 CG 16674 || Sbjct 436 CG 435 >seq6 Length=43186 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | |||||| || ||||||||||| ||||| ||||| ||||| Sbjct 22550 CGCCAAACGTCATCGCAAAGTTCTTCGTGACAACATCCAAGGCATCACAAAGCCCGCTAT 22491 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| |||||||| || || || || | || || ||| | |||||||| | Sbjct 22490 CCGTCGTTTGGCCCGTCGTGGCGGTGTAAAACGAATTTCGGGTTTGATTTATGAAGAAAC 22431 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||||||| | || | | | || || | ||||| | || ||||| Sbjct 22430 TCGCGGCGTTTTGAAAGTGTTTTTGGAAAATGTCATTCGGGATGCGGTTACTTACACCGA 22371 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || | || | ||||| ||||| | |||||| | || || || |||||||| || || Sbjct 22370 ACATTCCAAGAGGAAGACCGTCACGGCAATGGATGTTGTGTACGCTTTGAAACGGCAGGG 22311 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||| ||||| ||||| Sbjct 22310 ACGTACTTTGTATGGATTTGGCGGTTAA 22283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061724029127