Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13338 199 5e-46 seq13458 167 3e-36 seq477 167 3e-36 seq13244 159 4e-34 seq13827 132 6e-26 seq13941 131 2e-25 seq12995 89.7 6e-13 >seq13338 Length=646138 Score = 199 bits (220), Expect = 5e-46 Identities = 270/373 (72%), Gaps = 9/373 (2%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || |||| |||||| ||||| | ||||||||| || || || || | Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| || |||||||| || ||||||||||| |||||||| || ||||| | Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 33500 | || | || ||| || | || ||| || ||| ||||| | ||||||| Sbjct 454141 CGATGATTCGCTCGCC--GAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 454198 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 33559 |||||||| ||||| |||||||| || || || || || | ||||||| |||||| Sbjct 454199 CGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCA- 454257 Query 33560 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 33619 | | |||| | ||||||| |||||||| || ||||| || ||||| || || |||| Sbjct 454258 TCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317 Query 33620 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33679 | || || || ||||| || ||| | | ||| || || || | || ||| || || | Sbjct 454318 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 454377 Query 33680 GTTCCGCCAAATT 33692 ||||| | |||| Sbjct 454378 GTTCCAACTAATT 454390 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || |||| ||| |||||||| || ||||| || || ||| | || ||||| ||||| ||| Sbjct 454609 TTGGATAAATCGACTTCTTCGACGGTCCAGAACGACGCCACAGCTTTTTTGTACATTTTC 454668 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 || | ||| | ||| | |||||||||||| ||||| | |||||| Sbjct 454669 CACACGTCGTGATAGTCGATTGGGAAAATGACAAACCGGTTTGGA 454713 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| || ||| |||||| || || ||| ||||| ||||| || || || || Sbjct 453565 CATAACCCCGCATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTC 453624 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAT 33107 ||| |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct 453625 CAAAGATATATTCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672 >seq13458 Length=7495 Score = 167 bits (184), Expect = 3e-36 Identities = 258/365 (71%), Gaps = 9/365 (2%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || |||| |||||| ||||| | ||||||||| || || || || | Sbjct 2910 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 2851 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| || |||||||| | ||||||||||| |||||||| || || | | Sbjct 2850 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAG 2791 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 33500 | || | || ||| || | | ||| || ||| ||||| | ||||||| Sbjct 2790 CGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 2733 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 33559 |||||| | |||||||||||||| || || || || || | ||| ||| |||||| Sbjct 2732 CGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 2674 Query 33560 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 33619 | | || | | ||||||| |||||||| || ||||| || |||| || || |||| Sbjct 2673 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614 Query 33620 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33679 | || || || ||||| || ||| | | ||| || || || | || ||| || || | Sbjct 2613 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 2554 Query 33680 GTTCC 33684 ||||| Sbjct 2553 GTTCC 2549 Score = 167 bits (184), Expect = 3e-36 Identities = 249/350 (71%), Gaps = 9/350 (3%) Strand=Plus/Minus Query 33341 TTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33400 ||| |||||| ||||| | ||||||||| || || || || || ||||||||||| | Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447 Query 33401 AAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTC 33460 | |||||||| | ||||||||||| |||||||| || || || || || | || ||| | Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387 Query 33461 CATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33515 | || | ||| || ||| ||||| | ||||||| |||||||| || Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329 Query 33516 ACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCATTACTATCTTTAACAT 33574 |||||||||||| || || || || || | ||| ||| |||||| | | || | | | Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCA-TCGTGTCCTGGATGT 6270 Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634 |||||| ||||||||||| ||||| || |||| || || ||||| || || || |||| Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210 Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 | || ||| | | ||| || || || | || ||| || || |||||| Sbjct 6209 CATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGTTCC 6160 >seq477 Length=28440 Score = 167 bits (184), Expect = 3e-36 Identities = 259/365 (71%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || |||| |||||| ||||| | ||||||||| || || || || | Sbjct 7183 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 7242 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| || |||||||| | ||||||||||| |||||||| || || || | Sbjct 7243 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAG 7302 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 33500 | || | || || || | | ||| || ||| ||||| | ||||||| Sbjct 7303 CGATGATTCGTTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 7360 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 33559 |||||||| |||||||||||||| || || || || || | ||| ||| |||||| Sbjct 7361 CGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 7419 Query 33560 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 33619 | | || | | ||||||| |||||||| || ||||| || |||| || || |||| Sbjct 7420 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479 Query 33620 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33679 | || || || ||||| || ||| | | ||| || || || | || ||| || || | Sbjct 7480 TCGCAATTTGGAATCCATA-AAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 7538 Query 33680 GTTCC 33684 ||||| Sbjct 7539 GTTCC 7543 >seq13244 Length=114396 Score = 159 bits (176), Expect = 4e-34 Identities = 261/371 (70%), Gaps = 15/371 (4%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || |||| |||||| ||||| | ||||||||| || || || || | Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554 Query 33386 TAAGCCAAAATAT-----GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGC 33440 | ||||||||||| || |||||||| || ||||||||||| |||||||| || || Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614 Query 33441 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCC 33495 || || || | || ||| || | | ||| || ||| ||||| | ||||| Sbjct 3615 GAAAGCGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCC 3672 Query 33496 CAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAAAGAGATAGttt-t 33553 || |||||||| |||||||||||||| || || | ||||| | ||| ||| | Sbjct 3673 CACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCT 3732 Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 ||||| | | || | | ||||||| |||||||| || ||||| || |||| || | Sbjct 3733 TTTCA-TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 | ||||| || || || ||||| || ||| | | ||| || | || | || ||| || Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTTGAC 3851 Query 33674 AAAATCGTTCC 33684 ||| |||||| Sbjct 3852 TAAACCGTTCC 3862 >seq13827 Length=723868 Score = 132 bits (146), Expect = 6e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 62567 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62626 |||||| | || || ||||| || || || || || || | ||| || ||||| || || Sbjct 455326 CGATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAA 455267 Query 62627 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 62686 || |||||||| ||||||||||| || ||||| |||| |||||| ||||| || || Sbjct 455266 CGCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTC 455207 Query 62687 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 || ||| | | | | || ||||||||| || |||||||| || ||||| |||||||| Sbjct 455206 GAACGGAAACCTCATTAAAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGG 455147 Query 62747 TCTATGTCTCTTATTAGAGATTTCAG 62772 | |||| ||||| || | ||||| Sbjct 455146 ACGGTGTCGTTTATTCGATACTTCAG 455121 Score = 102 bits (112), Expect = 1e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||| || ||||||||| | ||||||| ||| | || | |||||||||||||| Sbjct 454555 TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTGAGGACACATCAACGA 454496 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| ||| || | ||| |||||||| || ||||| ||||||||||| || ||| Sbjct 454495 CCATATTCCATCGCTTTCCACGCGTTTCATGAAAAGATCCGGAATCCAAAGCGCGTAAAA 454436 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 | || || | || | | || || || || || |||||||| | |||||| || | | Sbjct 454435 CAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTTCAAATCGAGAAATTCAAA 454376 Query 63317 AATATCAGAATGCCACGGTTC 63337 | ||| | |||||||| || Sbjct 454375 CACATCGGCGTGCCACGGCTC 454355 >seq13941 Length=98454 Score = 131 bits (144), Expect = 2e-25 Identities = 242/349 (69%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || | ||| ||| ||||| | ||| ||||| || || || ||||| Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTTTC 98321 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 | |||||| || || ||||| || || || || || || ||||| || || || || || Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261 Query 33448 ATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGG 33502 | || || ||| || | || ||| ||| ||| ||||| | | ||||| | Sbjct 98260 ACAACTCGCTCGCCGAA--CGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACG 98203 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt-ttCATTA 33561 ||||||| || || || ||||| || || |||||||| | || | | ||||| Sbjct 98202 CCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT-- 98145 Query 33562 CTA-TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33620 | | || | || || |||| |||||||||||| ||||||||||| || | ||| || || Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085 Query 33621 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 ||||| |||||||| ||| ||| || ||||| || || || ||| Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCT 98036 >seq12995 Length=433444 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 33628 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687 ||||| || || ||||| || || || | || |||||||| || |||| |||| | Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCACT 320997 Query 33688 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33747 ||||||||||| || ||||| ||||| || |||||||| ||||| | || ||||||| Sbjct 320996 AAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAAC 320937 Query 33748 TATTTTTCG 33756 ||||||| Sbjct 320936 ATTTTTTCG 320928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622832429765240