Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 199 5e-46
seq13458 167 3e-36
seq477 167 3e-36
seq13244 159 4e-34
seq13827 132 6e-26
seq13941 131 2e-25
seq12995 89.7 6e-13
>seq13338
Length=646138
Score = 199 bits (220), Expect = 5e-46
Identities = 270/373 (72%), Gaps = 9/373 (2%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || |||| |||||| ||||| | ||||||||| || || || || |
Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| || |||||||| || ||||||||||| |||||||| || ||||| |
Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 33500
| || | || ||| || | || ||| || ||| ||||| | |||||||
Sbjct 454141 CGATGATTCGCTCGCC--GAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 454198
Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 33559
|||||||| ||||| |||||||| || || || || || | ||||||| ||||||
Sbjct 454199 CGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCA- 454257
Query 33560 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 33619
| | |||| | ||||||| |||||||| || ||||| || ||||| || || ||||
Sbjct 454258 TCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317
Query 33620 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33679
| || || || ||||| || ||| | | ||| || || || | || ||| || || |
Sbjct 454318 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 454377
Query 33680 GTTCCGCCAAATT 33692
||||| | ||||
Sbjct 454378 GTTCCAACTAATT 454390
Score = 86.0 bits (94), Expect = 8e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849
|| |||| ||| |||||||| || ||||| || || ||| | || ||||| ||||| |||
Sbjct 454609 TTGGATAAATCGACTTCTTCGACGGTCCAGAACGACGCCACAGCTTTTTTGTACATTTTC 454668
Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894
|| | ||| | ||| | |||||||||||| ||||| | ||||||
Sbjct 454669 CACACGTCGTGATAGTCGATTGGGAAAATGACAAACCGGTTTGGA 454713
Score = 82.4 bits (90), Expect = 1e-10
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059
|||||| || ||| |||||| || || ||| ||||| ||||| || || || ||
Sbjct 453565 CATAACCCCGCATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTC 453624
Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAT 33107
||| |||||||| ||||| |||||||| ||||| ||||||||||||
Sbjct 453625 CAAAGATATATTCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672
>seq13458
Length=7495
Score = 167 bits (184), Expect = 3e-36
Identities = 258/365 (71%), Gaps = 9/365 (2%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || |||| |||||| ||||| | ||||||||| || || || || |
Sbjct 2910 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 2851
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| || |||||||| | ||||||||||| |||||||| || || | |
Sbjct 2850 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAG 2791
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 33500
| || | || ||| || | | ||| || ||| ||||| | |||||||
Sbjct 2790 CGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 2733
Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 33559
|||||| | |||||||||||||| || || || || || | ||| ||| ||||||
Sbjct 2732 CGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 2674
Query 33560 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 33619
| | || | | ||||||| |||||||| || ||||| || |||| || || ||||
Sbjct 2673 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614
Query 33620 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33679
| || || || ||||| || ||| | | ||| || || || | || ||| || || |
Sbjct 2613 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 2554
Query 33680 GTTCC 33684
|||||
Sbjct 2553 GTTCC 2549
Score = 167 bits (184), Expect = 3e-36
Identities = 249/350 (71%), Gaps = 9/350 (3%)
Strand=Plus/Minus
Query 33341 TTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33400
||| |||||| ||||| | ||||||||| || || || || || ||||||||||| |
Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447
Query 33401 AAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTC 33460
| |||||||| | ||||||||||| |||||||| || || || || || | || ||| |
Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387
Query 33461 CATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33515
| || | ||| || ||| ||||| | ||||||| |||||||| ||
Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329
Query 33516 ACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCATTACTATCTTTAACAT 33574
|||||||||||| || || || || || | ||| ||| |||||| | | || | | |
Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCA-TCGTGTCCTGGATGT 6270
Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634
|||||| ||||||||||| ||||| || |||| || || ||||| || || || ||||
Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210
Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684
| || ||| | | ||| || || || | || ||| || || ||||||
Sbjct 6209 CATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGTTCC 6160
>seq477
Length=28440
Score = 167 bits (184), Expect = 3e-36
Identities = 259/365 (71%), Gaps = 10/365 (3%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || |||| |||||| ||||| | ||||||||| || || || || |
Sbjct 7183 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 7242
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| || |||||||| | ||||||||||| |||||||| || || || |
Sbjct 7243 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAG 7302
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 33500
| || | || || || | | ||| || ||| ||||| | |||||||
Sbjct 7303 CGATGATTCGTTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 7360
Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-ttttCAT 33559
|||||||| |||||||||||||| || || || || || | ||| ||| ||||||
Sbjct 7361 CGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 7419
Query 33560 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 33619
| | || | | ||||||| |||||||| || ||||| || |||| || || ||||
Sbjct 7420 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479
Query 33620 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33679
| || || || ||||| || ||| | | ||| || || || | || ||| || || |
Sbjct 7480 TCGCAATTTGGAATCCATA-AAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 7538
Query 33680 GTTCC 33684
|||||
Sbjct 7539 GTTCC 7543
>seq13244
Length=114396
Score = 159 bits (176), Expect = 4e-34
Identities = 261/371 (70%), Gaps = 15/371 (4%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || |||| |||||| ||||| | ||||||||| || || || || |
Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554
Query 33386 TAAGCCAAAATAT-----GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGC 33440
| ||||||||||| || |||||||| || ||||||||||| |||||||| || ||
Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614
Query 33441 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCC 33495
|| || || | || ||| || | | ||| || ||| ||||| | |||||
Sbjct 3615 GAAAGCGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCC 3672
Query 33496 CAATCGGCCTTCTTTTTTACACAAGGCATCGT-TTCTATGGCATTAAAGAGATAGttt-t 33553
|| |||||||| |||||||||||||| || || | ||||| | ||| ||| |
Sbjct 3673 CACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCT 3732
Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613
||||| | | || | | ||||||| |||||||| || ||||| || |||| || |
Sbjct 3733 TTTCA-TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791
Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673
| ||||| || || || ||||| || ||| | | ||| || | || | || ||| ||
Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTTGAC 3851
Query 33674 AAAATCGTTCC 33684
||| ||||||
Sbjct 3852 TAAACCGTTCC 3862
>seq13827
Length=723868
Score = 132 bits (146), Expect = 6e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 62567 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62626
|||||| | || || ||||| || || || || || || | ||| || ||||| || ||
Sbjct 455326 CGATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAA 455267
Query 62627 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 62686
|| |||||||| ||||||||||| || ||||| |||| |||||| ||||| || ||
Sbjct 455266 CGCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTC 455207
Query 62687 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746
|| ||| | | | | || ||||||||| || |||||||| || ||||| ||||||||
Sbjct 455206 GAACGGAAACCTCATTAAAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGG 455147
Query 62747 TCTATGTCTCTTATTAGAGATTTCAG 62772
| |||| ||||| || | |||||
Sbjct 455146 ACGGTGTCGTTTATTCGATACTTCAG 455121
Score = 102 bits (112), Expect = 1e-16
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
|||||| || ||||||||| | ||||||| ||| | || | ||||||||||||||
Sbjct 454555 TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTGAGGACACATCAACGA 454496
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256
||| ||| || | ||| |||||||| || ||||| ||||||||||| || |||
Sbjct 454495 CCATATTCCATCGCTTTCCACGCGTTTCATGAAAAGATCCGGAATCCAAAGCGCGTAAAA 454436
Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316
| || || | || | | || || || || || |||||||| | |||||| || | |
Sbjct 454435 CAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTTCAAATCGAGAAATTCAAA 454376
Query 63317 AATATCAGAATGCCACGGTTC 63337
| ||| | |||||||| ||
Sbjct 454375 CACATCGGCGTGCCACGGCTC 454355
>seq13941
Length=98454
Score = 131 bits (144), Expect = 2e-25
Identities = 242/349 (69%), Gaps = 12/349 (3%)
Strand=Plus/Minus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || | ||| ||| ||||| | ||| ||||| || || || |||||
Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTTTC 98321
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447
| |||||| || || ||||| || || || || || || ||||| || || || || ||
Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261
Query 33448 ATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGG 33502
| || || ||| || | || ||| ||| ||| ||||| | | ||||| |
Sbjct 98260 ACAACTCGCTCGCCGAA--CGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACG 98203
Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt-ttCATTA 33561
||||||| || || || ||||| || || |||||||| | || | | |||||
Sbjct 98202 CCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT-- 98145
Query 33562 CTA-TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33620
| | || | || || |||| |||||||||||| ||||||||||| || | ||| || ||
Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085
Query 33621 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669
||||| |||||||| ||| ||| || ||||| || || || |||
Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCT 98036
>seq12995
Length=433444
Score = 89.7 bits (98), Expect = 6e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 33628 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687
||||| || || ||||| || || || | || |||||||| || |||| |||| |
Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCACT 320997
Query 33688 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33747
||||||||||| || ||||| ||||| || |||||||| ||||| | || |||||||
Sbjct 320996 AAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAAC 320937
Query 33748 TATTTTTCG 33756
|||||||
Sbjct 320936 ATTTTTTCG 320928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622832429765240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |