Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 125 7e-24
seq13894 102 8e-17
>seq12471
Length=105862
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| | ||||||||| | || || ||||| | || ||| |
Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| |||||| | || ||| |||||| |||||||||||||| ||||| ||||||
Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | | |||| || || |||||| | ||||||| | | ||||||| || |||
Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAAC 73161
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || |||||||| || | || |||| || || | ||||| ||
Sbjct 73160 ATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGG 73114
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
|||||| | || || |||||| | ||||||||| | || ||| | ||| | || |||
Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|| ||||| ||| | || ||| ||||| |||||||||||||| ||||| |||||
Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
||| | | || | || ||| |||||| | ||||||| | | | | |||||||| ||
Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAA 73452
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||||| |||||||| ||| | || |||| ||
Sbjct 73451 CATTCAGAAAGAATCAACTCTTCACTTGGTGCT 73419
Score = 111 bits (122), Expect = 2e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| | ||||||||| | || || | || | || ||| |
Sbjct 73858 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCAAGC 73799
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| |||||| | || || |||||| || || ||||| || ||||||||||||
Sbjct 73798 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAA 73739
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | |||| || || || || |||||||| | | | | |||||||| |||
Sbjct 73738 CAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACACTTAGCGACTACAAC 73679
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|| || |||||||| || | ||| |||| |||| | |||||||||
Sbjct 73678 ATCCAGAAAGAATCGACCTTGCATTTGGTATTGAGGTTGCGAGGAGGAA 73630
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || ||||| | ||||| || | ||||| | ||| | || | |
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| ||||| | |||||| ||||| |||||||||||||| || || ||||||
Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | || || | | || |||||||||||||||| | | | | ||||| || |||
Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGCGATTACAAC 72933
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977
||||| |||||||| || | ||| ||||
Sbjct 72932 ATTCAGAAAGAATCAACGCTTCATTTGGT 72904
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| | |||||||| | || || ||||| | || ||| |
Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| |||||| | || ||| || ||| || || ||||| || || |||||||||
Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | || |||| | ||| ||||| | || |||| | | | |||||||| |||
Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||| |||||||| || | || |||| || || | ||||| ||
Sbjct 72415 ATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGG 72369
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| | ||||| || | ||||| | ||| | || |||
Sbjct 72367 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACATTGGAAGTCGAGCCAAGT 72308
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | ||||| ||||| |||||||| || || || ||||| |||
Sbjct 72307 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATTCCGCCCGACCAA 72248
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | || | | || ||||||||||| |||| | | | | ||||| || |||
Sbjct 72247 CAGCGATTGATCTTTGCTGGTAAACAACTCGAGGATGGTCGCACATTGAGCGATTACAAC 72188
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| || || || |||| |||| |||| ||| | || ||
Sbjct 72187 ATCCAAAAGGAGTCCACGCTCCACTTGGTTTTGAGGCTTCGCGGTGG 72141
>seq13894
Length=1211295
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || ||||| ||||| ||||| | || ||| ||||| | ||| ||
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | ||||| || || ||||||||||| || || ||||| |||
Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | | |||| | || || ||| | ||||||| ||| | | ||| || |||
Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|| || || ||||| ||| | ||| |||| || || | ||||| ||||
Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGAA 231488
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| |||||||||||| | ||||| | ||| | ||| ||
Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | || || || || |||||||| || || || || |||||
Sbjct 232113 GACACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAG 232054
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| || | || | || || || ||| | ||||||| | | | | ||| || |||
Sbjct 232053 CAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAAC 231994
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|| || ||||| || || | ||||| || ||| | | ||||| ||||
Sbjct 231993 ATCCAGAAAGAGTCAACCCTTCATCTTGTACTGCGTTTGAGAGGTGGAA 231945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478574212436080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |