Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 114 1e-20
seq13894 109 4e-19
>seq12471
Length=105862
Score = 114 bits (126), Expect = 1e-20
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||||| |||| || ||||||||||||||||| |||||||| ||| |
Sbjct 72141 CCACCGCGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTC 72200
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||| | |||||| || ||| | || | ||||||||||| ||
Sbjct 72201 AATGTGCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGA 72260
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||||| || || || ||| || | | | ||||| | |||||
Sbjct 72261 ATTCCCTCTTTGTCTTGGATCTTAGC--CTTGACATTTTCAATGGTGTCACTTGGCTCGA 72318
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| |||||||| || || ||||| ||||||||||| ||||||||
Sbjct 72319 CTTCCAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 98.7 bits (108), Expect = 8e-16
Identities = 163/233 (70%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| | ||| || |||| || ||||| || || || || |||||||| |||
Sbjct 73114 CCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTG 73173
Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824
| || |||||| ||||||||||| || || |||| | |||||||| |||
Sbjct 73174 AGTGT----GCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGG 73229
Query 16825 AGGCACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882
||| | || |||||||| ||| | ||| || || | | | |||||||| |||
Sbjct 73230 AGGAATCCCTTCTTTGTCTTGAATCTTGGCT--TTTACATTCTCGATAGTGTCGCTTGGC 73287
Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||| | || || |||||||| || || ||||||||||||||||||||
Sbjct 73288 TCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|||||||| | ||||| ||||| ||||| || || || || || ||||||||||||
Sbjct 73632 CCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTA 73691
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | |||| || | || || || || |||| | |||||||| || |||
Sbjct 73692 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGA 73751
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || || || || ||| | |||||| | | | ||||||| ||||||
Sbjct 73752 ATTCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACC 73811
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || || |||||||| || || ||||| ||||||||||||||
Sbjct 73812 TCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 73858
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| | ||| || |||| || || ||||| || || || ||||||||||||
Sbjct 72369 CCGCCTCTCAACCTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTT 72428
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | |||||||| ||||| || ||| |||| || |||||||| || ||
Sbjct 72429 AAAGTGCGGCCATCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGG 72488
Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || || || ||||| ||| || || | | | ||||||| |||||
Sbjct 72489 ATTCCTTCCTTATCTTGAATTTTAGCT--TTTACATTCTCGATCGTGTCGCTTGGCTCAA 72546
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||| | || ||||| ||||| || || ||||||||||| ||||||||
Sbjct 72547 CTTCGAGAGTAATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || || || || || |||||||||||| || || | ||
Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
||||||||||| || || | || | |||||||| || ||| | || ||||||||
Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| ||||| | | | || || | ||||| ||||| ||| ||||
Sbjct 73539 TGGATCTTGGCT--TTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGG 73596
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
||||||| || || |||||||| || |||||||||
Sbjct 73597 TTTTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631
>seq13894
Length=1211295
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| || | || ||||| ||| || || || ||||| || |||||||||||||
Sbjct 232175 CCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAT 232234
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| |||| | | || |||||||| ||||||||| |||| | || || || ||| ||
Sbjct 232235 AAGGTTCGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGG 232294
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || ||||| || |||| | |||||| | | | || ||| ||||| |
Sbjct 232295 ATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACT 232354
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
|| | || ||||| || ||||| | ||||| |||||||||||||||||
Sbjct 232355 TCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786
|||| |||||| || || ||||| || |||||||| |||| || |||| | | || |||
Sbjct 231508 ACCAAATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCC 231567
Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846
||||| || |||||| |||| | || |||||||| || | ||| ||||||||
Sbjct 231568 AATTGCTTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGG 231627
Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906
|||| | ||| || | | | ||||| || || ||| | ||| ||||| |||
Sbjct 231628 ATTTTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTT 231687
Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| | ||||| || |||||||||||
Sbjct 231688 CCGGTTAAAGTTTTCACGAAAATCTGCAT 231716
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
|||||| | ||| || || ||||| || || |||||||| |||| || ||| | | ||
Sbjct 231961 CAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATC 232020
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||||||| || ||||| | || | || || || || || | ||||||||||||
Sbjct 232021 TTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTC 232080
Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
|||| | ||| || | | | ||||| || || ||||| ||||||||
Sbjct 232081 TTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGT 232140
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||||| || | ||||| ||||||||||||||
Sbjct 232141 TTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/215 (69%), Gaps = 1/215 (0%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTT-TGTATGTTGTAGTCGGCCATGGTTTTGGCGT 16781
||| || | ||| || || || |||||| || |||||||| || | || |||| | | |
Sbjct 231732 CAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCAT 231791
Query 16782 CCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT 16841
| |||| |||||| || ||| | || | ||||| || ||| ||| | ||| |||||||
Sbjct 231792 CTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGT 231851
Query 16842 CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
| |||| | |||||| | | | || ||| || || ||| | |||||||
Sbjct 231852 CTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGG 231911
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
| || || || | ||||| || ||||||||||||
Sbjct 231912 TCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405015233409610
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