Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13338 196 6e-45 seq13458 165 1e-35 seq477 165 1e-35 seq13244 154 2e-32 seq13827 132 6e-26 seq13941 131 2e-25 seq12995 87.8 2e-12 >seq13338 Length=646138 Score = 196 bits (216), Expect = 6e-45 Identities = 264/364 (73%), Gaps = 9/364 (2%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 454021 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 454080 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| ||||| ||||| || |||||||| || |||||||| |||||||| | Sbjct 454081 TTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAG 454140 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 32857 | || | || ||| || | || ||| || ||| ||||| | ||||||| Sbjct 454141 CGATGATTCGCTCGCC--GAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 454198 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 32916 |||||||| ||||| ||||| ||||| || || || || | ||||||| |||||| Sbjct 454199 CGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCA- 454257 Query 32917 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 32976 | | |||| | || |||| |||||||| || ||||| || ||||| || || |||| Sbjct 454258 TCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAA 454317 Query 32977 TGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33036 | || ||||| ||||| || || | | ||| || || || | || ||| || || | Sbjct 454318 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 454377 Query 33037 GTTC 33040 |||| Sbjct 454378 GTTC 454381 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAA---TGATTGTCTTCTTGA-GA--CATAACTCCCA 32367 ||||||| ||| | || |||| |||| || | |||| | | || |||||| || Sbjct 453516 TTTAAAAATCAGCTTCGAGAGTAAAAACGTGCTGGTCTCCCGTACGATTCATAACCCCGC 453575 Query 32368 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 32427 ||| |||||| || || ||| ||||| ||||| || || || || || ||||||| Sbjct 453576 ATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTCCAAAGATATAT 453635 Query 32428 TTTCCATGAAATCGAATGGATTGGTAACATTATAAAT 32464 | ||||| ||||| |||||||| |||||||||||| Sbjct 453636 TCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672 >seq13458 Length=7495 Score = 165 bits (182), Expect = 1e-35 Identities = 257/364 (71%), Gaps = 9/364 (2%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 2910 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 2851 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| ||||| ||||| | |||||||| || |||||||| ||||| | | Sbjct 2850 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGTAAG 2791 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 32857 | || | || ||| || | | ||| || ||| ||||| | ||||||| Sbjct 2790 CGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 2733 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 32916 |||||| | ||||||||||| ||||| || || || || | ||| ||| |||||| Sbjct 2732 CGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 2674 Query 32917 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 32976 | | || | | || |||| |||||||| || ||||| || |||| || || |||| Sbjct 2673 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 2614 Query 32977 TGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATC 33036 | || ||||| ||||| || || | | ||| || || || | || ||| || || | Sbjct 2613 TCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACC 2554 Query 33037 GTTC 33040 |||| Sbjct 2553 GTTC 2550 Score = 165 bits (182), Expect = 1e-35 Identities = 248/349 (71%), Gaps = 9/349 (3%) Strand=Plus/Minus Query 32698 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 32757 |||||||||| ||||| | ||||||||| || || || || || ||||||||||| | Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447 Query 32758 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 32817 |||| ||||| | |||||||| || |||||||| ||||| || || || | || ||| | Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387 Query 32818 CATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 32872 | || | ||| || ||| ||||| | ||||||| |||||||| || Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329 Query 32873 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCATTACTATCTTTAACAT 32931 ||||||||| ||||| || || || || | ||| ||| |||||| | | || | | | Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCA-TCGTGTCCTGGATGT 6270 Query 32932 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 32991 | |||| ||||||||||| ||||| || |||| || || ||||| || ||||| |||| Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210 Query 32992 CGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 | || || | | ||| || || || | || ||| || || ||||| Sbjct 6209 CATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGTTC 6161 >seq477 Length=28440 Score = 165 bits (182), Expect = 1e-35 Identities = 232/322 (72%), Gaps = 9/322 (3%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 7183 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 7242 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| ||||| ||||| | |||||||| || |||||||| ||||| || | Sbjct 7243 TTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAG 7302 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 32857 | || | || || || | | ||| || ||| ||||| | ||||||| Sbjct 7303 CGATGATTCGTTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAA 7360 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt-ttttCAT 32916 |||||||| ||||||||||| ||||| || || || || | ||| ||| |||||| Sbjct 7361 CGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAAATAATTTCTTTTCA- 7419 Query 32917 TACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 32976 | | || | | || |||| |||||||| || ||||| || |||| || || |||| Sbjct 7420 TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTCTCAA 7479 Query 32977 TGGCCATTTGAAATCCGTAGAA 32998 | || ||||| ||||| || || Sbjct 7480 TCGCAATTTGGAATCCATAAAA 7501 >seq13244 Length=114396 Score = 154 bits (170), Expect = 2e-32 Identities = 259/370 (70%), Gaps = 15/370 (4%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || ||||||||||| ||||| | ||||||||| || || || || | Sbjct 3495 CCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCT 3554 Query 32743 TAAGCCAAAATAT-----GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 32797 | ||||||||||| ||||| ||||| || |||||||| || |||||||| ||||| Sbjct 3555 TTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGC 3614 Query 32798 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCC 32852 || || || | || ||| || | | ||| || ||| ||||| | ||||| Sbjct 3615 GAAAGCGATGATTCGCTCGCC--GAATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCC 3672 Query 32853 CAATCGGCCTTCTTTTTTACACAAGGCATTGTC-TCTATAGCATTAAAGAGATAGttt-t 32910 || |||||||| ||||||||||| ||| | || | ||||| | ||| ||| | Sbjct 3673 CACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCT 3732 Query 32911 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 32970 ||||| | | || | | || |||| |||||||| || ||||| || |||| || | Sbjct 3733 TTTCA-TCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATAT 3791 Query 32971 TTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC 33030 | ||||| || ||||| ||||| || || | | ||| || | || | || ||| || Sbjct 3792 TCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTTGAC 3851 Query 33031 AAAATCGTTC 33040 ||| ||||| Sbjct 3852 TAAACCGTTC 3861 >seq13827 Length=723868 Score = 132 bits (146), Expect = 6e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 62422 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62481 |||||| | || || ||||| || || || || || || | ||| || ||||| || || Sbjct 455326 CGATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAA 455267 Query 62482 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATC 62541 || |||||||| ||||||||||| || ||||| |||| |||||| ||||| || || Sbjct 455266 CGCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTC 455207 Query 62542 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 62601 || ||| | | | | || ||||||||| || |||||||| || ||||| |||||||| Sbjct 455206 GAACGGAAACCTCATTAAAAGAAACGCGTCGGCCAATCCTTGCACCCCAATTCCGATAGG 455147 Query 62602 TCTATGTCTCTTATTAGAGATTTCAG 62627 | |||| ||||| || | ||||| Sbjct 455146 ACGGTGTCGTTTATTCGATACTTCAG 455121 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||| || ||||||||| | ||| ||| ||| | || | |||||||||||||| Sbjct 454555 TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTGAGGACACATCAACGA 454496 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| ||| || | ||| |||||||| || ||||| ||||||||||| || ||| Sbjct 454495 CCATATTCCATCGCTTTCCACGCGTTTCATGAAAAGATCCGGAATCCAAAGCGCGTAAAA 454436 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | || || | || | | || || || || || |||||||| | |||||| || | | Sbjct 454435 CAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTTCAAATCGAGAAATTCAAA 454376 Query 63172 AATATCAGAATGCCACGGTTC 63192 | ||| | |||||||| || Sbjct 454375 CACATCGGCGTGCCACGGCTC 454355 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || |||||||||||||||| ||| |||| ||| |||| || || || | || || || Sbjct 453130 TTCTTTGTTTCTTTGTGTAAATTGGATATGGCGATTCGGGCTGCGAGGACAGCGTAGTCG 453071 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||||| || || | |||||| |||| || || | | |||||||||| || ||| Sbjct 453070 GGATGTTTCGTCGTCATTGCAGCTGCTGTTTCTGCCGCTAAATTGTCCAATTCGACAGTT 453011 Query 63941 GTTACACC 63948 |||||||| Sbjct 453010 GTTACACC 453003 >seq13941 Length=98454 Score = 131 bits (144), Expect = 2e-25 Identities = 242/349 (69%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || ||||| ||| ||||| | ||| ||||| || || || ||||| Sbjct 98379 TCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTTTC 98321 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 | |||||| || ||||| || || || || || ||||| ||||| || ||||| || || Sbjct 98320 ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAGCT 98261 Query 32805 ATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGG 32859 | || || ||| || | || ||| ||| ||| ||||| | | ||||| | Sbjct 98260 ACAACTCGCTCGCCGAA--CGTCGCCGTCTTGTTCCCGATCCAATCGAGCGCCCACAACG 98203 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt-ttCATTA 32918 ||||||| || || || || ||||| || |||||||| | || | | ||||| Sbjct 98202 CCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCAT-- 98145 Query 32919 CTA-TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 32977 | | || | || || |||| ||||||||||| ||||||||||| || | ||| || || Sbjct 98144 CGAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGAT 98085 Query 32978 GGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || || |||||||| || ||| || ||||| || || || ||| Sbjct 98084 CATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCT 98036 >seq12995 Length=433444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 |||||||| | ||| | ||| ||| ||||| | || ||||| | || | |||||| Sbjct 321914 TCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTTTC 321855 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 | |||||| ||| ||||||||||| || |||||||||||||| || || ||||| || Sbjct 321854 AACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATGCG 321795 Query 32805 ATAAGTCTCTCTCCATAA 32822 | | ||| || ||| || Sbjct 321794 ACTAATCTATCGCCAAAA 321777 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 32984 TTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGC 33043 |||||| || || || || || || || | || |||||||| || |||| ||| | Sbjct 321057 TTGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCAC 320998 Query 33044 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 |||||||||||| || ||||| ||||| || |||||||| ||||| | || ||||||| Sbjct 320997 TAAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAA 320938 Query 33104 ATATTTTTCG 33113 ||||||| Sbjct 320937 CATTTTTTCG 320928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633515261224400